Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq52966 154 6e-35 seq31517 154 6e-35 seq24523 154 6e-35 seq7866 140 1e-30 seq8222 82.4 3e-13 >seq52966 Length=2273 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 2086 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 2145 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 2146 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 2205 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 2206 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 2247 >seq31517 Length=712 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 270 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 329 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 330 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 389 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 390 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 431 >seq24523 Length=801 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 532 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 473 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 472 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 413 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 412 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 371 >seq7866 Length=235 Score = 140 bits (154), Expect = 1e-30 Identities = 136/173 (79%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 |||||| || |||| | ||| | ||| || || |||||| ||||| || ||||||| Sbjct 235 GCACCACCGGCCGACCTGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGG 178 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||| Sbjct 177 ACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGG 118 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || | | ||| ||||||||||| || || | ||| ||||||||||| Sbjct 117 TCCGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 65 >seq8222 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||||||||||||| | |||||||| ||| | ||| Sbjct 10 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACGTGCGCGAGTGTCCGGGGGGCAA 69 Query 465 ACCCGTGCGCGTAATGAAAG 484 ||| | ||||| | |||||| Sbjct 70 ACCTGGGCGCGGAGTGAAAG 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078782884100