Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq28082 87.8 2e-15 seq54446 84.2 2e-14 seq24822 73.4 4e-11 >seq28082 Length=2048 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| || Sbjct 869 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCCGTGG 928 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | | |||||||| ||| ||||||||||| ||||| Sbjct 929 GGAGCTGCGAAGAAGCTTTGATCCGCGGATTTCCGAATGGGGAAACCC 976 >seq54446 Length=153271 Score = 84.2 bits (92), Expect = 2e-14 Identities = 127/178 (71%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||||||| ||| | ||||||| |||||||||| || |||||||||||| ||||| Sbjct 2454 TGGATGCCTTGGCATTAAGAGGCGATGAAGGACGTGGTACGCTGCGAAAAGCCGTGGGGA 2513 Query 70 TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATA 129 || | | |||||||| ||||||||||||||| ||||| | | | | || Sbjct 2514 GGTGCGAACAACCTTTGATCCGCGGATATCCGAATGGGGAAACCCACCACAAGTGTGGTA 2573 Query 130 TAT----CATAACGC-TAGGCGTTAG--GCGAACGTGGGGAACTGAAACATCTAAGTA 180 | | || | |||| || || || ||| | ||||||||||||||||||||| Sbjct 2574 CCTTGCACTGAATACATAGGTGTAAGGAGCAAACCTAGGGAACTGAAACATCTAAGTA 2631 >seq24822 Length=2082 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| | ||||||| |||||||||| || ||||||| |||| || Sbjct 929 CGGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGG 988 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 989 GGAGCTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 1036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476537908702