Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq54080 141 1e-31 seq54446 134 2e-29 seq53321 111 2e-22 >seq54080 Length=2557 Score = 141 bits (156), Expect = 1e-31 Identities = 183/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||| | | |||||| Sbjct 1317 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 1375 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| || || || Sbjct 1376 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGC-----CCCCC--CTAT 1428 Query 121 ACACGT-CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 ||| | ||| || || || |||||| |||||||||||||| | | ||||||| Sbjct 1429 GCACTTGCGTACAT----AGAGGGCCCCCTTATCCCGAAGTTACGGAGGTAAATTGCCGA 1484 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||| Sbjct 1485 GTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGG 1544 Query 240 TTTACGGTA 248 ||| |||| Sbjct 1545 TTTCGGGTA 1553 Score = 141 bits (156), Expect = 1e-31 Identities = 183/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||| | | |||||| Sbjct 1875 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 1933 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| || || || Sbjct 1934 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGC-----CCCCC--CTAT 1986 Query 121 ACACGT-CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 ||| | ||| || || || |||||| |||||||||||||| | | ||||||| Sbjct 1987 GCACTTGCGTACAT----AGAGGGCCCCCTTATCCCGAAGTTACGGAGGTAAATTGCCGA 2042 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||| Sbjct 2043 GTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGG 2102 Query 240 TTTACGGTA 248 ||| |||| Sbjct 2103 TTTCGGGTA 2111 >seq54446 Length=153271 Score = 134 bits (148), Expect = 2e-29 Identities = 181/248 (73%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||||||||| || ||||| ||| | | | ||||||| Sbjct 4168 TTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCATGA-GACTTCGCAGA 4110 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||||||| ||| | ||||| ||| || |||| || || Sbjct 4109 GTCCTGTGTTTTTGTTAAACAGTCGCTACCCCCAATTCTGTGCCAC--CCACTAG---AA 4055 Query 122 CACGTCGTTCACCAGCAGTGGCAC-CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | ||||| | ||||| | || |||||||||| || |||||||| Sbjct 4054 ------GTTGCCTTTAAGTGGGTCTCCCTTATTCCAAAGTTACGGGAGCAATTTGCCGAG 4001 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | ||| ||| | | | |||||||| || || | | |||||||||||||| Sbjct 4000 TTCCTTCAACACCATTCTCTCAAGCGCCTTAGAATATTCATCTCGTCCACCTGTGTCGGT 3941 Query 241 TTACGGTA 248 || |||| Sbjct 3940 TTCGGGTA 3933 >seq53321 Length=7520 Score = 111 bits (122), Expect = 2e-22 Identities = 132/180 (73%), Gaps = 12/180 (7%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 572 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 630 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 |||||||||||||||||||||| ||||||||||| | || | | | || Sbjct 631 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCTGTTACAC-----------CTATAAGT 679 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | | || || ||||||||||||||||||| || |||||||||| |||||| Sbjct 680 AATTGCTTACGAAAGGTACTCCTTCTCCCGAAGTTACGGAGCTATTTTGCCGAGTTCCTT 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694018296566