Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq54080 104 2e-20 seq54446 91.5 2e-16 >seq54080 Length=2557 Score = 104 bits (114), Expect = 2e-20 Identities = 132/180 (73%), Gaps = 9/180 (5%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 1547 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 1488 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC------TACCCA--GAAA 136 |||| ||||| | | | ||||||||||||||| ||| ||| ||| || | Sbjct 1487 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGGGGCCCTCTATGTACGCAAGTGCA 1428 Query 137 TGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||| ||| ||| ||| |||||||||||| ||||||||||||||| ||| || Sbjct 1427 TAGG-GGGGGCACAGACCAGGGGGTGGCAACTGTTTAGCAAAAACACAGGGCTCTGCGAA 1369 Score = 104 bits (114), Expect = 2e-20 Identities = 132/180 (73%), Gaps = 9/180 (5%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 2105 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 2046 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC------TACCCA--GAAA 136 |||| ||||| | | | ||||||||||||||| ||| ||| ||| || | Sbjct 2045 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGGGGCCCTCTATGTACGCAAGTGCA 1986 Query 137 TGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||| ||| ||| ||| |||||||||||| ||||||||||||||| ||| || Sbjct 1985 TAGG-GGGGGCACAGACCAGGGGGTGGCAACTGTTTAGCAAAAACACAGGGCTCTGCGAA 1927 >seq54446 Length=153271 Score = 91.5 bits (100), Expect = 2e-16 Identities = 128/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | || | ||||||| |||||||||||||| |||| | | |||| Sbjct 3939 AAACCGACACAGGTGGACGAGATGAATATTCTAAGGCGCTTGAGAGAATGGTGTTGAAGG 3998 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCA---GAAA----T 137 |||| |||||| || || ||||||| || |||| || || || | | || | Sbjct 3999 AACTCGGCAAATTGCTCCCGTAACTTTGGAATAAGGGAGACCCACTTAAAGGCAACTTCT 4058 Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||| ||||| || || ||||||||||||||||||||| || ||| || Sbjct 4059 AGTGGGTGGCACAGAATTGGGGGTAGCGACTGTTTAACAAAAACACAGGACTCTGCGAA 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530908005668