Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq54080 327 3e-87 seq54446 268 2e-69 seq53321 197 3e-48 >seq54080 Length=2557 Score = 327 bits (362), Expect = 3e-87 Identities = 315/407 (77%), Gaps = 23/407 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | || || Sbjct 1145 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTGGAGACAGCGGGGAAGTCATT 1204 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1264 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||||||||||||||| || ||||||| || || || | Sbjct 1265 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTT-GC--------ACTCCTCC 1315 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||||||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 1316 TCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCAG 1375 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| |||||||| || | |||||| | | | || ||| ||| Sbjct 1376 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCCCTATGCACTTG 1435 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || | | | || | |||| |||||||||||||| | |||| Sbjct 1436 CGTA--------------CATAGAGGGCCCCCTTATCCCGAAGTTACGGAGGTAAATTGC 1481 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 | ||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 1482 CGAGTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 1528 Score = 242 bits (268), Expect = 9e-62 Identities = 250/330 (76%), Gaps = 23/330 (7%) Strand=Plus/Plus Query 90 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTT 149 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1780 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 1839 Query 150 TACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCAC 209 |||||||||||| || ||||||| || || || | ||||||||||||||| Sbjct 1840 TACCGGGGCTTCAATTCAGAGCTT-GC--------ACTCCTCCTCTTAACCTTCCGGCAC 1890 Query 210 CGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAAT 269 ||||||||||||| |||||||||||| ||| || || |||||| |||||||||| | Sbjct 1891 CGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCAGAGCCCTGTGTTTTTGCT 1950 Query 270 AAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCAC 329 ||||||| || | |||||| | | | || ||| ||| || | Sbjct 1951 AAACAGTTGCCACCCCCTGGTCTGTGCCCCCCCTATGCACTTGCGTA------------- 1997 Query 330 CCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGA 389 | | || | |||| |||||||||||||| | ||||| ||||||||| | | Sbjct 1998 -CATAGAGGGCCCCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAGTTCCTTCAACATA 2056 Query 390 GTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||||||||||||||||| ||||||| Sbjct 2057 GTTCTCTCAAGCGCCTTGGTATACTCTACC 2086 >seq54446 Length=153271 Score = 268 bits (296), Expect = 2e-69 Identities = 227/279 (81%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | | |||||||| | || | |||||||||||||| | ||||||||| Sbjct 4353 CGCGGGAACTCCGTATCTTCACGGAGAATCCAATTTCACTGAGTTGGTGTTGGAGACAGT 4294 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4293 GGGGAAATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4234 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| |||||||| || || |||| || Sbjct 4233 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGTGCTT-GC---- 4179 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || || | |||||||||| ||||||||||||||||| |||||||||||| | | Sbjct 4178 ----ACACCTCCTTTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCAT 4123 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | || ||||||| |||||||||| ||||||||||| Sbjct 4122 GAGACTTCGCAGAGTCCTGTGTTTTTGTTAAACAGTCGC 4084 >seq53321 Length=7520 Score = 197 bits (218), Expect = 3e-48 Identities = 213/276 (77%), Gaps = 11/276 (4%) Strand=Plus/Plus Query 6 ATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGG-TGGAGACAGCGCCG 64 ||| |||||||||||||||| | || ||||||||| || || | ||||||||| | Sbjct 385 ATATACTGCATCTTCACAGCAAATTTAATTTCACT-AGGCTAGTACTGGAGACAGTAGGG 443 Query 65 CCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 124 ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 444 AAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAG 503 Query 125 GACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTA 184 ||||||||| ||||| |||||||||||| | | || || | | || || ||| Sbjct 504 GACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATAT-----TCATGGCATT-TCTA 557 Query 185 ACCCCAT-CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 || || | || ||| | |||||||||||| |||| ||||||||| || || | Sbjct 558 --CCAATCCTTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACA 615 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || ||||||| ||||||||||| ||||||||||| Sbjct 616 ACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260084596864