Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq54446 309 6e-82 seq54080 304 3e-80 seq53321 250 5e-64 >seq54446 Length=153271 Score = 309 bits (342), Expect = 6e-82 Identities = 287/360 (80%), Gaps = 23/360 (6%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAAATCGTTA 67 |||||||| | || | ||||||||| |||| | ||||| |||||||| ||||||||| Sbjct 4339 ATCTTCACGGAGAATCCAATTTCACTGAGT-TGGTGTTGGAGACAGTGGGGAAATCGTTA 4281 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4280 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 4221 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||||||||||||||||||||||||| | |||| ||| |||| ||| ||| Sbjct 4220 AGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGTGC-----TTGC----ACACCTCCT 4170 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||||||||||||||||||||||||||||| ||||||| ||||| || ||||| ||||| Sbjct 4169 TTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCATGAGACTTCGCAGA 4110 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----------TGT 297 |||||||||||| |||||||||||| || ||||| ||| || || Sbjct 4109 GTCCTGTGTTTTTGTTAAACAGTCGCTACCCCCAATTCTGTGCCACCCACTAGAAGTTGC 4050 Query 298 CATAGACAGGCAC-CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT-AACA 355 | | | || | ||||| | || |||||||||| || ||||||||||||||| |||| Sbjct 4049 CTTTAAGTGGGTCTCCCTTATTCCAAAGTTACGGGAGCAATTTGCCGAGTTCCTTCAACA 3990 >seq54080 Length=2557 Score = 304 bits (336), Expect = 3e-80 Identities = 293/376 (78%), Gaps = 24/376 (6%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||||| | ||||||| | || Sbjct 1140 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTGGAGACAGCGGGGAAG 1199 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1259 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| ||||||| | |||| || |||| || Sbjct 1260 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGAGC-----TTGC----ACT 1310 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| ||||||||||| |||||||||||||||||| ||||||| || |||||||| || Sbjct 1311 CCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTT 1370 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TG- 296 ||||| |||||||||||| |||||||| || ||| ||| ||| || || Sbjct 1371 CGCAGAGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCCCTATGC 1430 Query 297 --------TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 ||||| ||| |||||| |||| ||||||||| | | ||||||||||| Sbjct 1431 ACTTGCGTACATAG--AGGGCCCCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAGTTC 1488 Query 349 CTTAACAATAGTTCTC 364 ||| | ||||||||| Sbjct 1489 CTTCAACATAGTTCTC 1504 Score = 228 bits (252), Expect = 2e-57 Identities = 227/294 (77%), Gaps = 24/294 (8%) Strand=Plus/Plus Query 84 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1780 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 1839 Query 144 TACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCAC 203 ||| ||||||| | |||| || |||| || ||| ||||||||||| |||| Sbjct 1840 TACCGGGGCTTCAATTCAGAGC-----TTGC----ACTCCTCCTCTTAACCTTCCGGCAC 1890 Query 204 CGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGT 263 |||||||||||||| ||||||| || |||||||| || ||||| |||||||||||| | Sbjct 1891 CGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCAGAGCCCTGTGTTTTTGCT 1950 Query 264 AAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TG---------TCATAGACAGGCAC 310 ||||||| || ||| ||| ||| || || ||||| ||| | Sbjct 1951 AAACAGTTGCCACCCCCTGGTCTGTGCCCCCCCTATGCACTTGCGTACATAG--AGGGCC 2008 Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||| |||| ||||||||| | | |||||||||||||| | ||||||||| Sbjct 2009 CCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAGTTCCTTCAACATAGTTCTC 2062 >seq53321 Length=7520 Score = 250 bits (276), Expect = 5e-64 Identities = 277/363 (76%), Gaps = 21/363 (6%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAAATCGT 65 |||||||||| | | | |||||||| || ||| | || ||||||| || |||| Sbjct 392 GCATCTTCACAGCAAATTTAATTTCACT-AGGCTAGTACTGGAGACAGTAGGGAAGTCGT 450 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 125 ||| || ||| ||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 451 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 510 Query 126 ATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC 185 || ||||| |||||||||||||| | ||| |||| || ||| |||| || ||| Sbjct 511 ATGGTTACAGCCGCCGTTTACTGAGATTTATATTCATGGC----ATT--TCTACCA-ATC 563 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 | || ||| |||||||||||||| ||||| |||||||||||| || | |||||||| Sbjct 564 CTTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCA 623 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT----GTCAT- 300 || ||||||||||| ||||||||||||| ||||||| | ||| || || Sbjct 624 GAGTCCTGTGTTTTTAGTAAACAGTCGCTACCCTCTATTCTGTTACACCTATAAGTAATT 683 Query 301 -----AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 || ||| || ||||||||| ||||||||| | ||||||||||||||||| || Sbjct 684 GCTTACGAAAGGTACTCCTTCTCCCGAAGTTACGGAGCTATTTTGCCGAGTTCCTT--CA 741 Query 356 ATA 358 ||| Sbjct 742 ATA 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061797172992