Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq36966 464 2e-128 seq54446 417 2e-114 seq53056 125 2e-26 seq20156 104 7e-20 seq19091 98.7 3e-18 seq8192 93.3 1e-16 seq2688 93.3 1e-16 seq2687 93.3 1e-16 >seq36966 Length=1316 Score = 464 bits (514), Expect = 2e-128 Identities = 394/477 (83%), Gaps = 6/477 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 474 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 415 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC-CTCTGACCCCT 119 |||||||||||||| |||||||| |||||||||||| |||||||| || ||||| | Sbjct 414 GTGGTTTAATTCGACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCTATGACCGGT 355 Query 120 -CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | |||||| || ||||| ||||||| | |||| ||||||| ||||||| ||||||| Sbjct 354 ACCAGAGATGGAACCTTCCC-TTCGGGGCATAGAGC-ACAGGTGCTGCATGGCTGTCGTC 297 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 296 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTT 237 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGG 297 || | |||| ||||| |||||||||| |||||||||||| || ||| |||||||||||| Sbjct 236 GCTACCATTTAGTTGAGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGG 177 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| |||||| | |||||||||||||||||||||||| Sbjct 176 GATGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGT 117 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| ||| || || || | ||||||| || |||| | |||||||||||| Sbjct 116 GACAATGGGACGCTAAGGGGCAACCCTTCGCAAATCTCAAAAAGCCG-TCTCAGTTCGGA 58 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||| |||||||||||| |||||| ||||||||||||||||||| |||||||| Sbjct 57 TTGGGCTCTGCAACTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCA 1 >seq54446 Length=153271 Score = 417 bits (462), Expect = 2e-114 Identities = 403/507 (79%), Gaps = 19/507 (4%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| |||||||||||||||||| || Sbjct 1121 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTAT 1180 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| | |||||||||| ||||||| | || | Sbjct 1181 GTGGTTTAATTCGAAGCAACGCGCAAAACCTTACCAGCCTTTGACATGGT--GAT---TA 1235 Query 121 TAGAGAT-AGAGGT---TTC---CCCTTCGGG-GGA-CAGAGTGACAGGTGATGCATGGT 171 ||||| |||| | ||| | ||||| ||| || | ||||||| ||||||| Sbjct 1236 AGGAGATGAGAGATCATTTCTGTCGGTTCGGCCGGATCACAC--ACAGGTGCTGCATGGC 1293 Query 172 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAG 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1294 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCATC 1353 Query 232 CTTAGTTGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGG 289 |||||||| | || | | || ||||||||| |||||||||||||||||||||| Sbjct 1354 GTTAGTTGCTAACAGGTATGGCTGAGCACTCTAACGAAACTGCCGGTGACAAACCGGAGG 1413 Query 290 AAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACA 349 |||||||||| |||||||| || ||||| ||||||| |||||||||||||| ||||| Sbjct 1414 AAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATAGGCTGGGCTACACACGTACTACA 1473 Query 350 ATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTC 409 |||| ||| || |||||| | | | ||| |||||| |||| |||| Sbjct 1474 ATGGTGGTGACAGTAGGTTGCGAAAGGGAAACCTGGAGCCAATCCC-TAAACACCATCTC 1532 Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 ||||| |||||| |||||||||| | |||||| |||||||||||||||||||||| Sbjct 1533 AGTTCAGATTGTCCGCTGCAACTCGCGGACATGAAGTCGGAATCGCTAGTAATCGTAGAT 1592 Query 470 CAGCATGCTACGGTGAATACGTTCCCG 496 |||||||||||||||||||||||| || Sbjct 1593 CAGCATGCTACGGTGAATACGTTCTCG 1619 >seq53056 Length=2280 Score = 125 bits (138), Expect = 2e-26 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 || || || |||||||||| ||| || ||| ||||||||||||||| ||||||||| Sbjct 637 GGAGAAGAAGTCAAATCATTATGGCCTATATAGGTTGGGCTACACACGTACTACAATGGT 578 Query 355 CAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 | ||||| | | ||| ||| ||| || | ||| |||| ||| || || ||||| Sbjct 577 AATTACAATGTGAAGCAAAAACGCAAGTTTTAGCTAATCATTAAAAATTAACCTTAGTTC 518 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 |||| |||| || |||| ||||||| ||||||||||||||||| ||| || | Sbjct 517 TGATTACTCTCTGTAAGTCGAGAGTATGAAGTAGGAATCGCTAGTAATCGCAGAATAGAA 458 Query 475 TGCTACGGTGAATA 488 |||| ||||||||| Sbjct 457 TGCTGCGGTGAATA 444 >seq20156 Length=127 Score = 104 bits (114), Expect = 7e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 ||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct 127 TTCGGATTGGGCTCTGCAACTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCA 68 Query 472 GCATGCTACGGTGAATACGTTCCCG 496 ||| || |||||||||||||||||| Sbjct 67 GCACGCCACGGTGAATACGTTCCCG 43 >seq19091 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||||||||| Sbjct 121 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGCAT 62 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| ||||| Sbjct 61 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACCCTTGA 18 >seq8192 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 121 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 62 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| ||||| Sbjct 61 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACCCTTGA 18 >seq2688 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGGAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACCCTTGA 110 >seq2687 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGAAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACCCTTGA 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503146600320