Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq53477 340 3e-91 seq16467 127 3e-27 seq21417 95.1 2e-17 seq20062 95.1 2e-17 seq55600 78.8 2e-12 >seq53477 Length=5923 Score = 340 bits (376), Expect = 3e-91 Identities = 232/264 (88%), Gaps = 14/264 (5%) Strand=Plus/Plus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3827 AAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 3886 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3887 AATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCA 3946 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3947 AAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTT 4006 Query 224 TCTGGCACCTCTAGCCTCAAATTTCGA--------------GGGACTAAAGGATCGATAG 269 |||| |||||||||| |||||| ||| | ||||||||||||||| Sbjct 4007 TCTGACACCTCTAGCTTCAAATCCCGAAATATAAAATAAACGACTCTAAAGGATCGATAG 4066 Query 270 GCCACACTTTCATGGTTTGTATTC 293 |||| |||||| |||||||||| Sbjct 4067 GCCATGCTTTCACAGTTTGTATTC 4090 >seq16467 Length=127 Score = 127 bits (140), Expect = 3e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 53 CATCAGTAGGGCAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 112 Query 92 TAGTGGGTGAACAAT 106 ||||||||||||||| Sbjct 113 TAGTGGGTGAACAAT 127 >seq21417 Length=137 Score = 95.1 bits (104), Expect = 2e-17 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 83 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTC 137 >seq20062 Length=107 Score = 95.1 bits (104), Expect = 2e-17 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 55 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTC 1 >seq55600 Length=68428 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| | || ||||| | ||| Sbjct 388 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACC 329 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 328 CTTGGGACC---TTCTCCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACGAC 272 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | || |||| |||||||| | ||| ||||| Sbjct 271 GCCGTCGATATGGACTCTTGGGCGTCATCAGCCTGTTATCCCCGGCGTACCTTTT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853915196352