Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq54446 199 8e-49 seq55600 176 9e-42 seq54080 176 9e-42 >seq54446 Length=153271 Score = 199 bits (220), Expect = 8e-49 Identities = 234/312 (75%), Gaps = 7/312 (2%) Strand=Plus/Plus Query 31 CGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCG 90 |||||| | || |||| || ||| |||| |||| ||||| || ||| |||||| | Sbjct 4448 CGCCAGCAGTCGTGGAGGCGTCCTTGAAATACCACCCTGGTTGTCTTTGATATCTAACTG 4507 Query 91 -GACGACGTATAACCGTTGA--CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 || | ||| || ||| | |||| || | ||| |||||||||||||||||| Sbjct 4508 AGATCAGTTAT--CC--TGATCCAGGACCCTGCATGGTGGGTAGTTTGACTGGGGCGGTC 4563 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||||||||||||||||||||||| ||| | || ||||| |||| ||||| || | Sbjct 4564 GCCTCCCAAAGAGTAACGGAGGCGCGCAATGGTAGGCTCAGGTTGGTCGGAAATCAACTG 4623 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 ||||||| |||| ||| || ||||||||| || |||||| ||||| ||||||| Sbjct 4624 ATGAGTGCAATGGCATAAGCCTGCCTGACTGCGAGACAGACAAGTCGAGCAGAGACGAAA 4683 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 ||||| | || |||||||| ||| | |||||| |||| |||||| ||||||||||| | Sbjct 4684 GTCGGTCATAGTGATCCGGTGGTTCCACATGGAAGGGCCATCGCTCAACGGATAAAAGGT 4743 Query 328 ACCCTGGGGATA 339 || | ||||||| Sbjct 4744 ACGCCGGGGATA 4755 >seq55600 Length=68428 Score = 176 bits (194), Expect = 9e-42 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 CGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 65 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 || | | | || ||||| || ||||| | | || ||| || |||| ||| | Sbjct 66 CGTGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCATAAGCCT 125 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| || |||||| ||||| |||||||||||| | || |||||||| || Sbjct 126 GCCTGACTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGG 185 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | |||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 186 TCCCGCGTGGATGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 235 >seq54080 Length=2557 Score = 176 bits (194), Expect = 9e-42 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 CGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 317 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 || | | | || ||||| || ||||| | | || ||| || |||| ||| | Sbjct 316 CGTGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCATAAGCCT 257 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| || |||||| ||||| |||||||||||| | || |||||||| || Sbjct 256 GCCTGACTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGG 197 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | |||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 196 TCCCGCGTGGATGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 147 Score = 176 bits (194), Expect = 9e-42 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 900 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 || | | | || ||||| || ||||| | | || ||| || |||| ||| | Sbjct 899 CGTGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCATAAGCCT 840 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| || |||||| ||||| |||||||||||| | || |||||||| || Sbjct 839 GCCTGACTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGG 780 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | |||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 779 TCCCGCGTGGATGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981842566592