Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq54446 145 8e-33 seq54080 134 2e-29 seq53321 109 6e-22 >seq54446 Length=153271 Score = 145 bits (160), Expect = 8e-33 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||||| | || | |||||||| || | | ||||||||||| Sbjct 4372 CGGGGTCTTTCCGTCTGACCGCGGGAACTCCGTATCTTCACGGAGAATCCAATTTCACTG 4313 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 4312 AGTTGGTGTTGGAGACAGTGGGGAAATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 4253 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4252 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 4193 >seq54080 Length=2557 Score = 134 bits (148), Expect = 2e-29 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 1114 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 1173 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 1174 AGTCTATGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCC 1233 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1234 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1264 Score = 78.8 bits (86), Expect = 1e-12 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 131 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1780 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1822 >seq53321 Length=7520 Score = 109 bits (120), Expect = 6e-22 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||||| ||| || | |||||||||| | | | ||||||||| | Sbjct 363 GGGTCTTTCCGTCCAATCATTTATATACTGCATCTTCACAGCAAATTTAATTTCACTAGG 422 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | ||||||| |||||||||| |||||||||||||| |||||| Sbjct 423 CTAGTACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 482 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 483 CAAGGAATTTCGCTACCTTAGGACCGTTA 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546899210658