Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq36966 275 1e-71 seq28440 275 1e-71 seq28439 275 1e-71 seq54446 253 4e-65 seq53723 253 4e-65 seq24741 253 4e-65 seq53056 129 1e-27 >seq36966 Length=1316 Score = 275 bits (304), Expect = 1e-71 Identities = 265/336 (79%), Gaps = 18/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 906 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 963 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 964 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 1023 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 1024 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 1083 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 1084 CCAACTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTT 1129 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 1130 TC-CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAA 1188 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 1189 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCGCT 1224 >seq28440 Length=110124 Score = 275 bits (304), Expect = 1e-71 Identities = 265/336 (79%), Gaps = 18/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 482 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 539 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 540 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 599 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 600 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 659 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 660 CCAACTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTT 705 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 706 TC-CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAA 764 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 765 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCGCT 800 >seq28439 Length=70556 Score = 275 bits (304), Expect = 1e-71 Identities = 265/336 (79%), Gaps = 18/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 482 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 539 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 540 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 599 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 600 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 659 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 660 CCAACTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTT 705 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 706 TC-CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAA 764 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 765 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCGCT 800 >seq54446 Length=153271 Score = 253 bits (280), Expect = 4e-65 Identities = 259/336 (77%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||| | ||| |||||||||||| |||||||||| |||| ||| Sbjct 693 CTTTACAACCCGAAGGCCTTCAT-CACTCACGCGGCATTG-CTGGATCAGGGTTTCCCCC 636 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 635 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 576 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||| | |||||| ||||||||| || Sbjct 575 TGTGGCTGATCATCCTCTCAGACCAGCTATAGATCGCAGGCTTGGTAGGCCATTACCCCA 516 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||| |||||| || |||| || ||| ||| | | || Sbjct 515 CCAACTACCTAATCTAACGCGGGCT---------GCTCAATCGGCGATAAAT------CT 471 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| ||| ||| | ||| | |||||||| | |||||| ||||| || || | Sbjct 470 TTCCCCCTAAGGGCTTATCCAGTATTAGCTACAGTTTCCCGTAGTTATTCCGAACCAATC 411 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | ||||| | || ||||||||||||| ||| || Sbjct 410 GGTACATTCCCACGCGTTACTCACCCGTCTGCCACT 375 >seq53723 Length=82647 Score = 253 bits (280), Expect = 4e-65 Identities = 259/336 (77%), Gaps = 18/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||| | ||| |||||||||||| |||||||||| |||| ||| Sbjct 478 CTTTACAACCCGAAGGCCTTCAT-CACTCACGCGGCATTG-CTGGATCAGGGTTTCCCCC 535 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 536 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 595 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||| | |||||| ||||||||| || Sbjct 596 TGTGGCTGATCATCCTCTCAGACCAGCTATAGATCGCAGGCTTGGTAGGCCATTACCCCA 655 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||| |||||| || |||| || ||| ||| | | || Sbjct 656 CCAACTACCTAATCTAACGCGGGCT---------GCTCAATCGGCGATAAAT------CT 700 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| ||| ||| | ||| | |||||||| | |||||| ||||| || || | Sbjct 701 TTCCCCCTAAGGGCTTATCCAGTATTAGCTACAGTTTCCCGTAGTTATTCCGAACCAATC 760 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | ||||| | || ||||||||||||| ||| || Sbjct 761 GGTACATTCCCACGCGTTACTCACCCGTCTGCCACT 796 >seq24741 Length=27080 Score = 253 bits (280), Expect = 4e-65 Identities = 259/336 (77%), Gaps = 18/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||| | ||| |||||||||||| |||||||||| |||| ||| Sbjct 478 CTTTACAACCCGAAGGCCTTCAT-CACTCACGCGGCATTG-CTGGATCAGGGTTTCCCCC 535 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 536 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 595 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||| | |||||| ||||||||| || Sbjct 596 TGTGGCTGATCATCCTCTCAGACCAGCTATAGATCGCAGGCTTGGTAGGCCATTACCCCA 655 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||| |||||| || |||| || ||| ||| | | || Sbjct 656 CCAACTACCTAATCTAACGCGGGCT---------GCTCAATCGGCGATAAAT------CT 700 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| ||| ||| | ||| | |||||||| | |||||| ||||| || || | Sbjct 701 TTCCCCCTAAGGGCTTATCCAGTATTAGCTACAGTTTCCCGTAGTTATTCCGAACCAATC 760 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | ||||| | || ||||||||||||| ||| || Sbjct 761 GGTACATTCCCACGCGTTACTCACCCGTCTGCCACT 796 >seq53056 Length=2280 Score = 129 bits (142), Expect = 1e-27 Identities = 141/181 (78%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 1186 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 1244 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | | | || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 1245 CCACTGCTGCC-CTTTTCGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 1302 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||||| |||| ||| ||||| || |||||| |||||| Sbjct 1303 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 1362 Query 195 C 195 | Sbjct 1363 C 1363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071391725760