Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq36931 93.3 6e-17 seq55842 87.8 3e-15 seq54943 87.8 3e-15 seq31607 77.0 5e-12 seq33006 73.4 6e-11 >seq36931 Length=650932 Score = 93.3 bits (102), Expect = 6e-17 Identities = 101/133 (76%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 74 CTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGATGG 133 || |||| ||||||||||| || || ||||||||||||||||| ||||| || ||||| | Sbjct 322424 CTCCCAG-ACCTTCTGGTGCCGGCGCTGCAGCGAGCAATCGCGTTCGCCGAGATGGATCG 322482 Query 134 CGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGTACT 193 || ||| |||||||| || | || | || | ||| || || || ||||| | Sbjct 322483 CGCCGCCGCGGCCGTCGCCGAGGATCTGGATCTCGATGTGGCGCGGCTTCTGGAGGTATT 322542 Query 194 TTTCCAGGTAGAC 206 ||||||||||||| Sbjct 322543 TTTCCAGGTAGAC 322555 >seq55842 Length=221880 Score = 87.8 bits (96), Expect = 3e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 |||||||| || | | ||||||||| || || |||| |||||||||||| ||||| ||| Sbjct 147161 GGCGCTTCCTCGATCAGCTTCTGGTGCCGCCGCTGCACCGAGCAATCGCGCTCGCCGAGG 147220 Query 127 TGGATGGCGTGGCCCTGGCCGTC 149 |||||||||| ||| |||| ||| Sbjct 147221 TGGATGGCGTTGCCGTGGCTGTC 147243 >seq54943 Length=275133 Score = 87.8 bits (96), Expect = 3e-15 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71 CTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGA 130 |||||||| ||||||||||| || ||||||||||| || ||||| ||||| || |||| Sbjct 60407 CTTCTTCCCAGACCTTCTGGTGGCGGCGTTGCAGCGAACAGTCGCGCTCGCCGAGATGGA 60466 Query 131 TGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGT 190 | ||| ||| |||||||| || | || | ||| | || || || ||| |||| Sbjct 60467 TCGCGCCGCCGCGGCCGTCGCCGAGAATCTGGATTTCGATATGGCGAGGCTTGCCGAGGT 60526 Query 191 ACTTTTCCAGGTAGAC 206 | ||||||| ||||| Sbjct 60527 ATTTTTCCAAATAGAC 60542 >seq31607 Length=69812 Score = 77.0 bits (84), Expect = 5e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 64 GCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCC 123 ||||| ||||| || | | ||||||||| || |||||||||||||| ||||| ||| | Sbjct 46707 GCCGGTGCTTCCTCGATCAGCTTCTGGTGCCGGCGTTGCAGCGAGCATTCGCGTTCGAAC 46766 Query 124 AGGTGGATGGCGTGGCCCTGGCCGTCG 150 | |||||| ||| |||| ||||||| Sbjct 46767 AAGTGGATCACGTTGCCCGTGCCGTCG 46793 >seq33006 Length=53709 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/125 (73%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 |||||| || || ||||| ||||| | | ||||||||| ||||| ||||||||||| Sbjct 34505 CAGGCCGGGAGCTGGCGCCTCTTCGATCAGCTTCTGGTGGTTGCGTTGGAGCGAGCAATC 34446 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 |||||| | |||||| | || || | || |||| || | |||||||| || || Sbjct 34445 GCGGTCCCACAGGTGCACAATATGACCATAGCTGTCGCCCAAGATCTGCACTTCGACATG 34386 Query 174 ACGTG 178 |||| Sbjct 34385 GCGTG 34381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735595429540