Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq54446 383 6e-104 seq24822 306 1e-80 seq28082 298 2e-78 seq13003 80.6 1e-12 seq23621 78.8 3e-12 seq5284 77.0 1e-11 >seq54446 Length=153271 Score = 383 bits (424), Expect = 6e-104 Identities = 454/604 (75%), Gaps = 12/604 (2%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | |||| ||| | ||| | || ||||| Sbjct 3398 TCGACGATGGACCTTAG-CACCCACCGTCTGTCTGCCGAGCTGT-ACTGTCAGGTATTCG 3341 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 ||||||||||| || |||||| | |||||||| ||||||||||||||||| || Sbjct 3340 GAGTTTGGTTGGGTTTGGTAAGAATCGCTTCCCCCTAGCCCATCCAGTGCTCTACCCCCT 3281 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 ||| || | | |||||| |||| ||| ||||| |||||||||||||| | ||| Sbjct 3280 GGAGTAATCGCTCGACGCACTACCTCAATAGTTTTCGCGGAGAACCAGCTATTTCCGAGT 3221 Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 |||||| |||||||||||||||||||||||||||| || |||||||| ||| |||| Sbjct 3220 TTGATTAGCCTTTCACCCCTATCCACAGGTCATCCGCTACCTTTTCAACGGTAGTCGGTT 3161 Query 241 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 |||||||||| || ||||| |||||||||||||||||||||||||| | ||| Sbjct 3160 CGGTCCTCCAGTACGTGTTACCGCACCTTCAACCTGCCCATGGATAGATCACCCGGTTTC 3101 Query 301 GGGTCT--TGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 358 |||||| || ||| ||| ||||||||| |||||| |||| ||||| |||| | Sbjct 3100 GGGTCTAATGCACGTA--ACTTGGTCGCCCTATTAAGACTCGGTTTCCCTACGCCTACAC 3043 Query 359 CACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGC 418 | ||| |||| || || || | | | || |||| | | |||| | ||||||| |||| Sbjct 3042 CTATCGGCTTAAGCTTGCTACGTA-CACTAAGTCGCTGACCCATTATGCAAAAGGTACGC 2984 Query 419 CGTCACC--TGGTACCTAAAAGGC-ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTC 475 |||||| | ||| || || || |||||||| | ||||||||| | |||| Sbjct 2983 CGTCACAGTTTGTATGGCGAACCATACGTCTGCTCCGACTGTTTGTAGGCATCCGATTTC 2924 Query 476 AGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCC 534 |||| |||||||||||||| | ||||| |||||||||||||||||||||||||||| | Sbjct 2923 AGGT-CTATTTCACTCCCCTCATCGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTTC 2865 Query 535 GCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAA 594 |||||||||| |||||||| |||| ||| || ||||||| ||| |||| || | Sbjct 2864 ACTATCGGTCATTAAGGAGTACTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGGA 2805 Query 595 TTTC 598 |||| Sbjct 2804 TTTC 2801 >seq24822 Length=2082 Score = 306 bits (338), Expect = 1e-80 Identities = 402/549 (73%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCT 111 || |||||||||||||||| || |||||| || | |||||||| |||||||||||| Sbjct 1884 GGTATTCGGAGTTTGGTTGGGTTTGGTAAGACGGTAAGTCCCCCTAGCCCATCCAGTGCT 1825 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | | || ||| || |||||||| ||||| ||||||||||||| Sbjct 1824 CTACCCCCTGAGGTATTCATCCGAGGCGATACCTAAATATCTTTCGCGGAGAACCAGCTA 1765 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | |||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct 1764 TTTCCCAGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCGGAGTCTTTTTCAACAG 1705 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 | ||||||||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 1704 ACACCCGTTCGGTCCTCCAGTGAGTGTTACCTCACCTTCAACCTGCTCATGGCTAGATCA 1645 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 || | ||||||||| | ||| ||||||||| ||||||||||||||||| Sbjct 1644 CTAGGTTTCGGGTCTAATACAACGAACTTGG-CGCCCTATTAAGACTCGCTTTCGCTACG 1586 Query 352 GCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAA 411 |||| || ||| |||| || || || || |||| ||| ||| | ||||| Sbjct 1585 CCTACACCTATCGGTTTAAGCTTGCTCGTTAAATTAAG-TCGCTGGCCCATAATACAAAA 1527 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 || ||| ||||||| | || ||| ||| |||||| | | ||||||| || Sbjct 1526 GGTACGACGTCACCCAGAAC-TAAT-----CTTGGGCTCCGTCTGTTTGTAGGTGTCCGG 1473 Query 472 TTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 1472 TTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTG 1414 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || | ||||||||| ||||||| |||||||| |||||||||| ||| |||| || Sbjct 1413 GTTCACTATCGGTCGATGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 1354 Query 591 GAAATTTCA 599 |||||| Sbjct 1353 AGGATTTCA 1345 >seq28082 Length=2048 Score = 298 bits (330), Expect = 2e-78 Identities = 388/530 (73%), Gaps = 11/530 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCT 111 || |||||||||||||||| || |||||| || | |||||||| |||||||||||| Sbjct 1850 GGTATTCGGAGTTTGGTTGGGTTTGGTAAGACGGTAAGTCCCCCTAGCCCATCCAGTGCT 1791 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | | || ||| || |||||||| ||||| ||||||||||||| Sbjct 1790 CTACCCCCTGAGGTATTCATCCGAGGCGATACCTAAATATCTTTCGCGGAGAACCAGCTA 1731 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | |||||||||||||||||||||||| ||||| |||||| | |||||||| Sbjct 1730 TTTCCCAGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCGGAGCCTTTTTCAACAG 1671 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 ||||||||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 1670 GCACCCGTTCGGTCCTCCAGTGAGTGTTACCTCACCTTCAACCTGCTCATGGCTAGATCA 1611 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 || | |||||||| | || | | ||||||||||| ||||||||||||||||| Sbjct 1610 CTAGGTTTCGGGTC-TAATACAACGAACTTGACGCCCTATTCAGACTCGCTTTCGCTACG 1552 Query 352 GCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAA 411 || | || ||| |||| || || | | || |||| ||| ||| | ||||| Sbjct 1551 CCTTCGCCTATCGGCTTAAGCTTGC-TCGTTAAATTAAGTCGCTGGCCCATAATACAAAA 1493 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 || ||| ||||| || || | ||| |||||| | | ||||||| || Sbjct 1492 GGTACGATGTCAC------CCAGAACGAATCTTGAGCTCCATCTGTTTGTAGGTGTCCGG 1439 Query 472 TTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 1438 TTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTG 1380 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 || | ||||||||| | ||||||| |||||||| |||||||||| || Sbjct 1379 GTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCC 1330 >seq13003 Length=122 Score = 80.6 bits (88), Expect = 1e-12 Identities = 93/124 (75%), Gaps = 5/124 (4%) Strand=Plus/Plus Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATC---CCCTC 219 |||||||||| | |||||||||||||||||||||||| ||||| |||||| ||| Sbjct 1 AACCAGCTATTTCCCAGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCGGAGCCT- 59 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCC 279 |||||||| ||||||||||||| || ||||| ||||||||||| | Sbjct 60 -TTTTTCAACAGGCACCCGTTCGGTCCTCCAGTGAGTGTTACCTCACCTTCAACCTGCTC 118 Query 280 ATGG 283 |||| Sbjct 119 ATGG 122 >seq23621 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 145 TAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCC 204 ||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| | Sbjct 1 TAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGCT 60 Query 205 ACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 || | ||||||| | | | |||| || |||||||| |||| || Sbjct 61 ACCGCTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 106 >seq5284 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| |||||| ||||| ||| ||| |||||| ||||||| Sbjct 36 ACGCTCTACCTAAATAGATTTCGTAGAGAACTAGCTAACACTAAGCTTGATTAGCCTTTC 95 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || ||||||| Sbjct 96 ACCCCTAGCTACCACTCATCCC 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816568657408