Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq54446 381 1e-103 seq24822 327 3e-87 seq28082 315 2e-83 >seq54446 Length=153271 Score = 381 bits (422), Expect = 1e-103 Identities = 352/431 (82%), Gaps = 25/431 (6%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| | Sbjct 3203 CCTATCCACAGGTCAT-CCGCTACCTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTACG 3146 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| |||||||||||| ||||||||| |||||||| |||||||| | | Sbjct 3145 T-GTTACCGCACCTT-CAACCTGCCCAT-GGATAGATCACCCGGTTT-CGGGTCTAATGC 3090 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTA 181 | | ||| | ||||||| ||||||||| ||| | |||||||| | ||||| | ||| Sbjct 3089 AC-GTAACTTGGTCGCCCTATTAAGACTCGGTTTCC-CTACGCCTACACCTATCGGCTTA 3032 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC----- 236 ||||| || || | | ||||||||||||||||||| |||||||||||| ||||| Sbjct 3031 AGCTT-GCTACGTACACTAAGTCGCTGACCCATTATGCAAAAGGTACGCCGTCACAGTTT 2973 Query 237 ------CCAAC--AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTT 288 | ||| | || ||||| |||| ||||| |||| || ||||||| ||||||| Sbjct 2972 GTATGGCGAACCATACGTCTGCTCCGACTGTTTGTAGGCATCCGATTTCAGG-TCTATTT 2914 Query 289 CACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA 348 |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 2913 CACTCCCCTCATCGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCA 2854 Query 349 GTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCT 408 | || |||| |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 2853 TTAAGGAGTACTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCTCGTGTC 2794 Query 409 CCGTCCTACTC 419 ||| | ||||| Sbjct 2793 CCGCCTTACTC 2783 >seq24822 Length=2082 Score = 327 bits (362), Expect = 3e-87 Identities = 321/399 (80%), Gaps = 15/399 (4%) Strand=Plus/Minus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| ||| |||||| ||||| |||||||| Sbjct 1716 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGAGT-GTTACCTCACCTT-CAACCTGC 1659 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | | ||| || | ||||||| ||| Sbjct 1658 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGGCGCCCTATTAA 1603 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||||||||| | ||||| | |||||||| || | ||| ||||||| Sbjct 1602 GACTCGCTTT-CGCTACGCCTACACCTATCGGTTTAAGCTT-GCTCGTTAAATTAAGTCG 1545 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||| ||||| |||||||||||||| |||||||| || || |||||||| ||| || Sbjct 1544 CTGGCCCATAATACAAAAGGTACGACGTCACCCAGAACTAATCTTGGGCTCCGTCTGTTT 1485 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| | | |||||||||| ||||||||||||||||| |||||| |||||| ||||||| Sbjct 1484 GTAGGTGTCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 1426 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||||||||||||| | || |||| |||| |||||||| |||||||| Sbjct 1425 CTCACGGTACTGGTTCACTATCGGTCGATGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 1366 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||||| |||| |||| ||| | |||||| Sbjct 1365 CCATGTTCAGACAGGATTTCACGTGTCCCGCCTTACTCG 1327 >seq28082 Length=2048 Score = 315 bits (348), Expect = 2e-83 Identities = 318/399 (80%), Gaps = 15/399 (4%) Strand=Plus/Minus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| ||| |||||| ||||| |||||||| Sbjct 1682 CTTTTTCAACAGGCACCCGTTCGGTCCTCCAGTGAGT-GTTACCTCACCTT-CAACCTGC 1625 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | | ||| || ||||||||| | | Sbjct 1624 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGACGCCCTATTCA 1569 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||||||||| | ||||| | |||||||| || | ||| ||||||| Sbjct 1568 GACTCGCTTT-CGCTACGCCTTCGCCTATCGGCTTAAGCTT-GCTCGTTAAATTAAGTCG 1511 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||| ||||| |||||||||||||| |||||||| || || || ||||| ||| || Sbjct 1510 CTGGCCCATAATACAAAAGGTACGATGTCACCCAGAACGAATCTTGAGCTCCATCTGTTT 1451 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| | | |||||||||| ||||||||||||||||| |||||| |||||| ||||||| Sbjct 1450 GTAGGTGTCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 1392 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||||||||||||| | || |||| |||| |||||||| |||||||| Sbjct 1391 CTCACGGTACTGGTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 1332 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | |||||||| || | |||| ||| | |||||| Sbjct 1331 CCGTGTTCAGACAGGATTGCACGTGTCCCGCCTTACTCG 1293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240895491328