Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq29645 87.8 1e-15 seq36931 86.0 5e-15 >seq29645 Length=124085 Score = 87.8 bits (96), Expect = 1e-15 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90 ||||| |||||||||| | ||| || || ||| |||||||| |||||||| || || | Sbjct 107873 CGCGCGCAGGTCGGCAAAGGCAAGGTGATCTGC--GGCCTGTCGGGCGGCGTCGATTCAT 107816 Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150 |||| | ||| ||| | ||| | ||||||||||| || || ||||||||||| |||| Sbjct 107815 CGGTGGCTGCGATCCTGATTCACGAAGCCATCGGCGATCAGCTCACCTGCGTGTTCGTCG 107756 Query 151 A 151 | Sbjct 107755 A 107755 >seq36931 Length=650932 Score = 86.0 bits (94), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 21 ATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCG 78 |||||| | | ||||| |||||||||| | || || || ||| ||||| ||||||| Sbjct 94048 ATCGCCAAGATCCGCGCGCAGGTCGGCAAGGGCAGGGTGATCTGC--GGCCTCTCCGGCG 94105 Query 79 GCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCT 138 |||| || || |||| | || | ||| | ||| |||||||||||||||| || |||| Sbjct 94106 GCGTCGATTCAGCGGTCGCGGCCGTCCTGATCCACGAGGCCATCGGCGACCAGCTCACCT 94165 Query 139 GCGTGTTTGTCGA 151 |||| || ||||| Sbjct 94166 GCGTCTTCGTCGA 94178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383788919760