Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq36966 232 1e-58 seq28440 232 1e-58 seq28439 232 1e-58 seq54446 217 3e-54 seq53723 217 3e-54 seq24741 217 3e-54 seq53056 98.7 2e-18 >seq36966 Length=1316 Score = 232 bits (256), Expect = 1e-58 Identities = 167/193 (87%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 938 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 997 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | ||| |||||||| || ||||| ||| Sbjct 998 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1057 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| ||||||| Sbjct 1058 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 1117 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 1118 GCGATAAATCTTT 1130 >seq28440 Length=110124 Score = 232 bits (256), Expect = 1e-58 Identities = 167/193 (87%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 514 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 573 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | ||| |||||||| || ||||| ||| Sbjct 574 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 633 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| ||||||| Sbjct 634 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 693 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 694 GCGATAAATCTTT 706 >seq28439 Length=70556 Score = 232 bits (256), Expect = 1e-58 Identities = 167/193 (87%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 514 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 573 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | ||| |||||||| || ||||| ||| Sbjct 574 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 633 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| ||||||| Sbjct 634 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 693 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 694 GCGATAAATCTTT 706 >seq54446 Length=153271 Score = 217 bits (240), Expect = 3e-54 Identities = 164/193 (85%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 661 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 602 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 601 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATAGAT 542 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || |||||||| ||| |||| | |||||||||||||||| |||| || || || Sbjct 541 CGCAGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTAACGCGGGCTGCTCAATCG 482 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 481 GCGATAAATCTTT 469 >seq53723 Length=82647 Score = 217 bits (240), Expect = 3e-54 Identities = 164/193 (85%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 510 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 569 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 570 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATAGAT 629 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || |||||||| ||| |||| | |||||||||||||||| |||| || || || Sbjct 630 CGCAGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTAACGCGGGCTGCTCAATCG 689 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 690 GCGATAAATCTTT 702 >seq24741 Length=27080 Score = 217 bits (240), Expect = 3e-54 Identities = 164/193 (85%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 510 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 569 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 570 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATAGAT 629 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || |||||||| ||| |||| | |||||||||||||||| |||| || || || Sbjct 630 CGCAGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTAACGCGGGCTGCTCAATCG 689 Query 181 GCGATAAATCTTT 193 ||||||||||||| Sbjct 690 GCGATAAATCTTT 702 >seq53056 Length=2280 Score = 98.7 bits (108), Expect = 2e-18 Identities = 114/150 (76%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | | | || || |||| Sbjct 1215 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTCGAAGACTTGGGC 1273 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 1274 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 1332 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 || |||| || ||||||||||||| Sbjct 1333 TTGAATAATTACTACAACAACTACCTAATC 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997833487872