Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq34751 145 2e-32 seq47259 116 9e-24 >seq34751 Length=230815 Score = 145 bits (160), Expect = 2e-32 Identities = 185/249 (74%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||||||||||||||||| |||||||||||| || || || |||||| | Sbjct 213570 CGATGGTCAGCAACTCGCCGCCCACCTCGGTCCACGCCAGACCGGTCACGACACCGACCT 213629 Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCT---CC 116 | |||| |||| ||| | |||||||| | || ||||||||||||| | || || Sbjct 213630 GGTCCTCGCTG-TCGATCTCGCCGTAGCGATACTTCGGCACGCCGAGGAACTCCTCGACC 213688 Query 117 AGGGAGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCAT--GTTCCTTGACCG 174 | | ||| || ||||||||| || || ||| || ||| |||||| |||| Sbjct 213689 ACAGCCTCG---GTCACCTTCACC--GACTTCTTCTTCGAGATCATCAATTCCTTCACCG 213743 Query 175 CCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGT 234 |||||||| || ||| |||| ||||| ||| |||||| || ||||||||||||| Sbjct 213744 CCTTGCGGGCGAGTGTCGAAATCTCACGCTCGAGGTTACGCACGCCCGCTTCGCGGGTGT 213803 Query 235 AGTAGCGGA 243 || ||||| Sbjct 213804 AGCGGCGGA 213812 >seq47259 Length=37638 Score = 116 bits (128), Expect = 9e-24 Identities = 176/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||| || | |||||| || ||||| ||||| ||||| | Sbjct 11445 CGATGGTCAGCAGCTCGCCGCCGACATCGGTCCAGGCAAGGCCGGTGACGATGCCGACCT 11386 Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGG 119 | || ||| |||| | |||| ||| | | || ||||||||||||| | ||||| Sbjct 11385 GGGGCTCGCT-CTCGATCTCGCCGAAGCGGTACTTCGGCACGCCGAGGAACTCTTCCAGA 11327 Query 120 GAGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCAT--GTTCCTTGACCGCCT 177 | | | |||||||| ||| || || || || ||| | ||||| ||||||| Sbjct 11326 GTTTTCTCGGTGACCTTGACC--GACTTCTTCTTGGAGATCATCAGCTCCTTCACCGCCT 11269 Query 178 TGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGT 237 ||||| || | | || || ||||||||| ||||| || ||||||||||||||| Sbjct 11268 TGCGGGCGAGTGTGGAGAGCTCACGCTCCAGGTTGCGCACGCCCGCTTCGCGGGTGTAGC 11209 Query 238 AGCGGA 243 ||||| Sbjct 11208 GGCGGA 11203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157742700672