Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq54446 179 9e-43 seq28082 154 3e-35 seq24822 154 3e-35 seq54080 125 2e-26 seq11940 89.7 1e-15 seq53321 82.4 2e-13 >seq54446 Length=153271 Score = 179 bits (198), Expect = 9e-43 Identities = 294/422 (70%), Gaps = 29/422 (7%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| ||||||||||| | || ||| | | Sbjct 3810 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTACGTTGATTAACATTGCG 3751 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 |||||||||||| ||||| | | | ||| | || || |||| ||| | Sbjct 3750 TAGGAACCCTTGGACTTACGGCGACAGAGTCTTTCACTCTGTTTATCGTTACTTATGTCA 3691 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAG-----CTTCACCA-CTG 173 ||||||||||| || | ||||| | ||| | || || |||||| || Sbjct 3690 GCATTCTCACTTCCAATACCTCCAGC-----GTCTCTCGCGAGTACGCCTTCACAGGCTT 3636 Query 174 ACACGACGCTCCCCTACCC----------AACCACACAGGTTGCCACAGCTTCGGCGGAT 223 | ||||||| ||||| |||| ||| || || |||||| | || Sbjct 3635 ATGGAACGCTCCGCTACCGCTTGTTAGTTAACCTAACAAAC--CCGCATCTTCGGTGCAT 3578 Query 224 AACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTAC 278 ||||| ||||||| |||||| ||||||| | || |||| |||||||||||| |||| Sbjct 3577 AACTTTAGCCCCGTTACATTTTCGGCGCAGGATAACTTATCTAGACCAGTGAGCTGTTAC 3518 Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338 || ||||| ||||||||||||||| ||||||||||||||| ||||| | ||||| Sbjct 3517 GCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTTGGTCGTCCCACA 3458 Query 339 TCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 |||||||||||| ||| | |||| ||| |||||| || | | ||||||||||||| | Sbjct 3457 TCCTTTCCCACTTAGTTATGACTTGGGGACCTTAGATGGCGGTTAGGGCTGTTTCCCTTT 3398 Query 399 CG 400 || Sbjct 3397 CG 3396 >seq28082 Length=2048 Score = 154 bits (170), Expect = 3e-35 Identities = 117/138 (85%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct 2036 GACCAGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTT 1977 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 || | | | ||||||||||||||||| || ||| | |||||||||||||||| | | Sbjct 1976 GTTTTGGGATTCCCACATCCTTTCCCACTTAGCCACGAATTAGGGGCCTTAGCTGTAGGT 1917 Query 382 CTGGGCTGTTTCCCTCTC 399 | ||| |||||||||||| Sbjct 1916 CCGGGTTGTTTCCCTCTC 1899 >seq24822 Length=2082 Score = 154 bits (170), Expect = 3e-35 Identities = 117/138 (85%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct 2070 GACCAGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTT 2011 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 || | | | ||||||||||||||||| || ||| | |||||||||||||||| | | Sbjct 2010 GTTTTGGGATTCCCACATCCTTTCCCACTTAGCCACGAATTAGGGGCCTTAGCTGTAGGT 1951 Query 382 CTGGGCTGTTTCCCTCTC 399 | ||| |||||||||||| Sbjct 1950 CCGGGTTGTTTCCCTCTC 1933 >seq54080 Length=2557 Score = 125 bits (138), Expect = 2e-26 Identities = 229/328 (70%), Gaps = 18/328 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | | ||| ||||| || Sbjct 2232 CGACTACGCCTTTCGGCCTCGCCTTAGGGACCGGCTAACCCTGCGAAGATTAACTTTACG 2291 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | | ||| | || || |||||||||| Sbjct 2292 CAGGAACCCTTGGACTTTCGGCGACAGTGTCTTTCACACTGTTTGTCGTTACTCATGCCA 2351 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA--CTGACA 176 |||||| |||| | || | ||||| | | |||| | | | | || || ||| Sbjct 2352 GCATTCGCACTTCTGAT-ACCTCCAGG-CGCTCTCACGAGTCGCCCTTCGCAGGCTTACA 2409 Query 177 CGACGCTCCCCTACCC---AACCACACAGGTTGCCAC----AGCTTCGGCGGATAACTTA 229 ||||||| ||||| | || || ||| ||||||||| | ||| Sbjct 2410 GAACGCTCCGCTACCGCGTAGCCCTTGCGGACTACACCCTAAGCTTCGGCTCGTGGCTTG 2469 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTC 284 ||||||| ||||| ||||||| ||| | ||| |||||||||||| |||||| || Sbjct 2470 AGCCCCGTTACATCTTCGGCGCAGAAACCCTTATTTAGACCAGTGAGCTGTTACGCTTTC 2529 Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAAC 312 ||| ||||||||||||||| |||||||| Sbjct 2530 TTTAAAGGATGGCTGCTTCTAAGCCAAC 2557 >seq11940 Length=192 Score = 89.7 bits (98), Expect = 1e-15 Identities = 84/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACC 265 ||||||||| | ||| ||||||| ||||| ||||||| | | | ||| |||| Sbjct 86 AGCTTCGGCTCGTGGCTTGAGCCCCGTTACATCTTCGGCGCAGGAACCCTTATTTAGACC 145 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAAC 312 |||||||| |||||| ||||| ||||||||||||||| |||||||| Sbjct 146 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAAC 192 >seq53321 Length=7520 Score = 82.4 bits (90), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| | Sbjct 1225 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT-T 1283 Query 326 ACGCAACTCCACATCCTTTC--CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 | ||| || |||| |||| | | | ||| || | ||||||||| ||| Sbjct 1284 ATAACACTTTGAATTATTTCATACACTTAATTA-TTTTTATGGACTTTAGCTGATACTCT 1342 Query 384 GGGCTGTTTCCCT 396 ||||||||||||| Sbjct 1343 GGGCTGTTTCCCT 1355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176931806208