Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq54446 118 9e-25 seq36966 104 2e-20 >seq54446 Length=153271 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||| | ||| ||| ||| |||||| ||||| | | Sbjct 1557 CGAGTTGCAGCGGACAATCTGAACTGAGATGGTGTTTA-GGGATTGGCTCCAGGTTTCCC 1499 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || || |||| ||||||||| ||||||| ||||| || ||||||||||| Sbjct 1498 TTTCGCAACCTACTGTCACCACCATTGTAGTACGTGTGTAGCCCAGCCTATAAGGGCCAT 1439 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||||||||| Sbjct 1438 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1399 >seq36966 Length=1316 Score = 104 bits (114), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| ||||||| ||| || || |||| || |||| || | || Sbjct 40 TCGAGTTGCAGAGCCCAATCCGAACT--GAGACGGCTTTTTGAGATTTGCGAAGGGTTGC 97 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || ||| ||| ||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 98 CCCTTAGCGTCCCATTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 157 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||||||||||||| ||| || |||| Sbjct 158 ATGAGGACTTGACGTCATCCCCACCTTCCTCGCGGCTTATCAC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415771329740