Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq54446 244 2e-62 seq53723 244 2e-62 seq24741 244 2e-62 seq36966 242 6e-62 seq28440 242 6e-62 seq28439 242 6e-62 seq13867 80.6 4e-13 seq5146 80.6 4e-13 seq5147 75.2 2e-11 >seq54446 Length=153271 Score = 244 bits (270), Expect = 2e-62 Identities = 228/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||||| |||||||| ||| |||| || |||||||||||||||||| Sbjct 1010 CCCACGCTTTCGCGCCTTAGCGTCAGATACGAGCCAGAAAGTCGCCTTCGCCACTGGTGT 951 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | | ||||||||| |||||||| |||||| | |||||| || |||||| | | Sbjct 950 TCTTGTGAATATCTACGAATTTCACCTCTACACTCACAATTCCACTTTCCTCTCTCGTCC 891 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| |||| | |||||||| |||| ||||| | |||||||||| ||| Sbjct 890 TCAAGCTTTGCAGTCTTAAATGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACATCTAACT 831 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| |||||||||| |||| ||| |||| | |||||| || ||| || Sbjct 830 TACAAGGCCGCCTACGCGCCCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTTCG 771 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 770 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCGTCAGGTA 721 >seq53723 Length=82647 Score = 244 bits (270), Expect = 2e-62 Identities = 228/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||||| |||||||| ||| |||| || |||||||||||||||||| Sbjct 161 CCCACGCTTTCGCGCCTTAGCGTCAGATACGAGCCAGAAAGTCGCCTTCGCCACTGGTGT 220 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | | ||||||||| |||||||| |||||| | |||||| || |||||| | | Sbjct 221 TCTTGTGAATATCTACGAATTTCACCTCTACACTCACAATTCCACTTTCCTCTCTCGTCC 280 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| |||| | |||||||| |||| ||||| | |||||||||| ||| Sbjct 281 TCAAGCTTTGCAGTCTTAAATGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACATCTAACT 340 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| |||||||||| |||| ||| |||| | |||||| || ||| || Sbjct 341 TACAAGGCCGCCTACGCGCCCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTTCG 400 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 401 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCGTCAGGTA 450 >seq24741 Length=27080 Score = 244 bits (270), Expect = 2e-62 Identities = 228/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||||| |||||||| ||| |||| || |||||||||||||||||| Sbjct 161 CCCACGCTTTCGCGCCTTAGCGTCAGATACGAGCCAGAAAGTCGCCTTCGCCACTGGTGT 220 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | | ||||||||| |||||||| |||||| | |||||| || |||||| | | Sbjct 221 TCTTGTGAATATCTACGAATTTCACCTCTACACTCACAATTCCACTTTCCTCTCTCGTCC 280 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| |||| | |||||||| |||| ||||| | |||||||||| ||| Sbjct 281 TCAAGCTTTGCAGTCTTAAATGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACATCTAACT 340 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| |||||||||| |||| ||| |||| | |||||| || ||| || Sbjct 341 TACAAGGCCGCCTACGCGCCCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTTCG 400 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 401 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCGTCAGGTA 450 >seq36966 Length=1316 Score = 242 bits (268), Expect = 6e-62 Identities = 230/291 (79%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 589 CCCACGCTTTCGTGCCTCAGCGTCAGTATCGGGCCAGTGAGCCGCCTTCGCCACTGGTGT 648 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | || ||||||||| |||||||| |||||| || | |||| | ||||||| | || Sbjct 649 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTCCCGAAC 708 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| |||| ||||| ||| | | ||| ||||||| | | |||||| ||||| Sbjct 709 TCAAGATCCTCAGTATCAAAGGCA-GTTCTGGAGTTGAGCTCCAGGATTTCACCCCTGAC 767 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || ||||||||| | |||||||| |||| | | |||| |||||| ||| ||| | Sbjct 768 TTAAAGACCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTC 827 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 828 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTA 878 >seq28440 Length=110124 Score = 242 bits (268), Expect = 6e-62 Identities = 230/291 (79%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 165 CCCACGCTTTCGTGCCTCAGCGTCAGTATCGGGCCAGTGAGCCGCCTTCGCCACTGGTGT 224 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | || ||||||||| |||||||| |||||| || | |||| | ||||||| | || Sbjct 225 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTCCCGAAC 284 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| |||| ||||| ||| | | ||| ||||||| | | |||||| ||||| Sbjct 285 TCAAGATCCTCAGTATCAAAGGCA-GTTCTGGAGTTGAGCTCCAGGATTTCACCCCTGAC 343 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || ||||||||| | |||||||| |||| | | |||| |||||| ||| ||| | Sbjct 344 TTAAAGACCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTC 403 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 404 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTA 454 >seq28439 Length=70556 Score = 242 bits (268), Expect = 6e-62 Identities = 230/291 (79%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 165 CCCACGCTTTCGTGCCTCAGCGTCAGTATCGGGCCAGTGAGCCGCCTTCGCCACTGGTGT 224 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | || ||||||||| |||||||| |||||| || | |||| | ||||||| | || Sbjct 225 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTCCCGAAC 284 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| |||| ||||| ||| | | ||| ||||||| | | |||||| ||||| Sbjct 285 TCAAGATCCTCAGTATCAAAGGCA-GTTCTGGAGTTGAGCTCCAGGATTTCACCCCTGAC 343 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || ||||||||| | |||||||| |||| | | |||| |||||| ||| ||| | Sbjct 344 TTAAAGACCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTC 403 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 404 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTA 454 >seq13867 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||| |||| | ||| || ||||| || ||| || ||||||||| Sbjct 83 CCACCTACGCACCCTTTACCCCCAGTCAATGCGAATAACACTAGCCCTCTCCGTATTACC 24 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 23 GCGACTGCTGGCACGAAGTTAG 2 >seq5146 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| ||||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 74 CCACCTACGCGCCCTTTACACCCAGTCAATGCGAATAACACTAGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq5147 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 74 CCACCTACGCCCCCTTTACACCCAGTCAATGCGAATAACACTAGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828344418482