Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq54446 138 8e-31 seq55600 125 5e-27 seq54080 125 5e-27 seq53321 71.6 1e-10 >seq54446 Length=153271 Score = 138 bits (152), Expect = 8e-31 Identities = 115/138 (83%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 4744 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATGTGGAACCACCGGATCACTATGACCGA 4685 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| | Sbjct 4684 CTTTCGTCTCTGCTCGACTTGTCTGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 4625 Query 120 TCACTACGATTTCCGACC 137 ||| | ||||||||||| Sbjct 4624 TCAGT-TGATTTCCGACC 4608 >seq55600 Length=68428 Score = 125 bits (138), Expect = 5e-27 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 224 TACCTTTTATCCGTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGA 165 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||||| ||||||| ||| ||| ||| ||||||| ||| Sbjct 164 CTTTCGTCTCTGCTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCG 105 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 104 ACGAACGATTTCCGACCGT 86 >seq54080 Length=2557 Score = 125 bits (138), Expect = 5e-27 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 158 TACCTTTTATCCGTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGA 217 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||||| ||||||| ||| ||| ||| ||||||| ||| Sbjct 218 CTTTCGTCTCTGCTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCG 277 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 278 ACGAACGATTTCCGACCGT 296 Score = 125 bits (138), Expect = 5e-27 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 741 TACCTTTTATCCGTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGA 800 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||||| ||||||| ||| ||| ||| ||||||| ||| Sbjct 801 CTTTCGTCTCTGCTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCG 860 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 861 ACGAACGATTTCCGACCGT 879 >seq53321 Length=7520 Score = 71.6 bits (78), Expect = 1e-10 Identities = 85/113 (75%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 CCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCT 62 ||||||||||||| ||| || ||||||||||||| | | ||||||||||| || || Sbjct 1 CCTTTTATCCGTTAAGCAATAGCCCTTCCATTCAGCACTATTGGATCACTATGGCCGACT 60 Query 63 TTCGCATCTG-CTCTAGTTGTTGCTCT-CGCAATCAAGCACACTTTTGCCATT 113 |||| |||| || | ||| ||| | || ||||||| ||||| ||||| Sbjct 61 TTCGTCTCTGAATCGATCTGTCAATCTACCCAGTCAAGCAATCTTTTACCATT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351812751400