Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq53173 123 3e-26 >seq53173 Length=1818 Score = 123 bits (136), Expect = 3e-26 Identities = 154/209 (74%), Gaps = 24/209 (11%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC----------CTTTGCT 54 |||| | ||||| |||||||||||||| ||||||||||||| || ||| Sbjct 1465 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCCAATTCTCTGCC 1524 Query 55 --CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTT 109 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || |||| Sbjct 1525 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTT 1584 Query 110 TCTAGGACCGCCCG--------TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161 | | | | ||| | ||||||| |||| ||||||| ||||| | | |||| | Sbjct 1585 T-TGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTA 1643 Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||||| ||||||||||||||||||||| Sbjct 1644 ATTGTCAGAGGTGAAATTCTTGGATTTAT 1672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511718559680