Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq54446 129 6e-28 seq55600 123 2e-26 seq54080 123 2e-26 >seq54446 Length=153271 Score = 129 bits (142), Expect = 6e-28 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| Sbjct 4732 GTTGAGCGATGGCCCTTCCATGTGGAACCACCGGATCACTATGACCGACTTTCGTCTCTG 4673 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||||| || ||||||||||||||||| | | ||| || Sbjct 4672 CTCGACTTGTCTGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCATCAGTTGATTTC 4613 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | ||| ||| | | || ||||||||| Sbjct 4612 CGACCAACCTGAGCCTACCATTGCGCGCCTCCGTTA 4577 >seq55600 Length=68428 Score = 123 bits (136), Expect = 2e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| |||| | | |||||||||||||||||||| |||||| ||| Sbjct 212 GTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 153 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || | ||||||||||| || |||||||||||| ||| | ||||| || Sbjct 152 CTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAACGATTTC 93 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| | ||||||||| Sbjct 92 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTA 57 >seq54080 Length=2557 Score = 123 bits (136), Expect = 2e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| |||| | | |||||||||||||||||||| |||||| ||| Sbjct 170 GTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 229 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || | ||||||||||| || |||||||||||| ||| | ||||| || Sbjct 230 CTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAACGATTTC 289 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| | ||||||||| Sbjct 290 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTA 325 Score = 123 bits (136), Expect = 2e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| |||| | | |||||||||||||||||||| |||||| ||| Sbjct 753 GTTGAGCGATGGCCCATCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 812 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || | ||||||||||| || |||||||||||| ||| | ||||| || Sbjct 813 CTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAACGATTTC 872 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| | ||||||||| Sbjct 873 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTA 908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473339667704