Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq55600 279 8e-73 seq54446 260 2e-67 seq18611 136 6e-30 seq54080 131 3e-28 >seq55600 Length=68428 Score = 279 bits (308), Expect = 8e-73 Identities = 226/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| ||| || ||||| | | Sbjct 559 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTACATAGCTATGCTG 500 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| | | |||||||||| || ||||||||||||||||||| Sbjct 499 CACTGCCGCTGGCGCGACAACAGCTCCACCAGAGGTACGTTCATCCCGGTCCTCTCGTAC 440 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| |||| || |||||| | |||||||||||||||||||| | Sbjct 439 TAGGGACAAATCCTCTCAATATTCCAACACCCACGGCAGATAGGGACCGAACTGTCTCAC 380 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 379 GACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 320 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 319 TTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 286 >seq54446 Length=153271 Score = 260 bits (288), Expect = 2e-67 Identities = 215/261 (82%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACT-TAGCTTCCCAGCTATGCACTTGGC 74 |||||||||| |||||| ||||| | ||| ||| ||||| | | || |||| |||| Sbjct 5066 GCTTAGATGCTTTCAGCAGTTATCTCGTCCGTACTGTAGCTACTCGGCGATGCCGCTGGC 5007 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 ||||| | | |||||||||| || || |||||||||||||||||| || || | | Sbjct 5006 GCGACAACCGATACACCAGAGGTACGTTCACCCCGGTCCTCTCGTACTAGGGGCAAGTTC 4947 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||||| | || || |||||| | |||||||||||||||||||| |||||||||||||| Sbjct 4946 TCTCAAGTCTCGAACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACC 4887 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| || ||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 4886 CAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTGCTTCAGCCCCA 4827 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||| Sbjct 4826 GGATGTGATGAGCCGACATCG 4806 >seq18611 Length=173 Score = 136 bits (150), Expect = 6e-30 Identities = 102/120 (85%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 51 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 110 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 111 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 170 >seq54080 Length=2557 Score = 131 bits (144), Expect = 3e-28 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||| Sbjct 2 CGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 61 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| || |||||||||||| Sbjct 62 CTTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 96 Score = 131 bits (144), Expect = 3e-28 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||| Sbjct 585 CGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 644 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| || |||||||||||| Sbjct 645 CTTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780370803512