Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq24985 111 3e-22 >seq24985 Length=350276 Score = 111 bits (122), Expect = 3e-22 Identities = 185/266 (70%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGG 71 ||| ||||| ||| ||| ||||||||| | |||| | | ||||| |||| || ||| Sbjct 219865 GCCACTGGAATTCTCGGCGTTCCCGACCG-TCCTGCTGATCTCGACCATGCTGCGGCTGT 219807 Query 72 CATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTG 131 | | ||| |||| || || || || | || |||||||| || || ||||||| Sbjct 219806 CGCTCAACCTCGCGTCGACCCGCCTGATCCTGTCGCACGGCCATGAAGGGACCGCCGCTG 219747 Query 132 CCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTA 191 |||| | || ||| |||| ||||| | | ||||| |||| || | ||| |||| | Sbjct 219746 CCGGACACGTCATCGAGGCGTTCGGCAACTTCGTGATGAGCGGCAATTTCGTCATCGGCA 219687 Query 192 TCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGC 251 || | || ||| ||||||| | ||| | |||||||| || | |||||||| | || | Sbjct 219686 TCATCGTCTTCACGATCCTTGTCATCGTGAACTTTGTCGTCATCACCAAGGGTTCGGGCC 219627 Query 252 GGATTTCCGAGGTGAGCGCGCGGTTT 277 | || |||| ||| ||||| ||| Sbjct 219626 GCATCGCCGAAGTGGCGGCGCGCTTT 219601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809154972494