Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq43634 98.7 2e-18 seq54303 96.9 8e-18 >seq43634 Length=132559 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 253 CCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAG 312 ||||||||| ||||| || ||||| || || ||||| || ||||| ||||||||||| Sbjct 21579 CCAGGTGTCTTTGGTGCCGCCGCCCTGGCTGGAATTGACCACGAGCGAACCTTCCTTCAG 21638 Query 313 CGCCACGCGGGTCAAGCCACCGGGCACCA-GGCGGGTT--TCCTTGCCCGAGAGCACGAA 369 ||||||||| || || || |||||||| | || | | |||||||| | |||||||| Sbjct 21639 CGCCACGCGCGTTAACCCGCCGGGCACAACGGTGACATGATCCTTGCCGGTCAGCACGAA 21698 Query 370 GGGTCGCAAGTCG 382 || |||| |||| Sbjct 21699 CGGCCGCAGGTCG 21711 >seq54303 Length=793959 Score = 96.9 bits (106), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 163 TGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTG 222 |||| ||||| | ||||| || || | ||| || | | |||||| || | | | || | Sbjct 122082 TGCGCGCCAGATATTCGGCCCGTTCGACGTAGCGGGCGAGCCAATAGAGGTTTTCGGCGG 122141 Query 223 TTCTACGCAGCATA-CTCAGCCC-TCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGC 280 | | |||||| ||| | | |||| | ||||||||| ||||| || ||||| || Sbjct 122142 TACGCGACAGCATCTCTCTACTCGTCCAGGATCCAGGTGTCTTTGGTGCCGCCGCCCTGG 122201 Query 281 GACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACC 340 |||||| || ||||| ||||||||||| ||||| ||||| || | || ||||| || Sbjct 122202 CTCGAGTTCACCACCAGGGAGCCTTCCTTGAGCGCGACGCGTGTGAGCCCGCCGGGGACG 122261 Query 341 AGGCGGGTTTCCT---TGCCCGAGAGCACGAAGGGTCG 375 | | ||| || |||| | |||||||||||| || Sbjct 122262 ATGGTGGTGCTCTTGCTGCCGGTGAGCACGAAGGGGCG 122299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119364489600