Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq54446 277 4e-72 seq53723 277 4e-72 seq24741 277 4e-72 seq36966 268 2e-69 seq28440 268 2e-69 seq28439 268 2e-69 seq53056 105 2e-20 >seq54446 Length=153271 Score = 277 bits (306), Expect = 4e-72 Identities = 312/416 (75%), Gaps = 30/416 (7%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||| ||| |||||||||| |||| |||||| || | ||||| Sbjct 693 CTTTACAACCCGAAGGCCTTCATCACTCACGCGGCATTGCTGGATCAGGGTTTCCCCCAT 634 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 633 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 574 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||| | || ||| |||||||||||| || Sbjct 573 TGGCTGATCATCCTCTCAGACCAGCTATAGATCGCAGGCTTGGTAGGCCATTACCCCACC 514 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| | ||| | | | || | | || || | ||| || | Sbjct 513 AACTACCTAATCTAACGCGGGCTGCT-CAATCG-GCGA----TAAATCTTTCCCCCTAAG 460 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | |||| | |||||||| || |||||| || ||||| || ||| || Sbjct 459 GGC--------TTATCCAGTATTAGCTACAGTTTCCCGTAGTTATTCCGAACCAATCGGT 408 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCAC-----TCGTCAGCGAAGCAGCAAGCTGC 358 | |||||| | ||||||||||||| ||||| | | | |||||| ||| Sbjct 407 ACATTCCCACGCGTTACTCACCCGTCTGCCACTAACTTATTAACCGAAGC--CAA----- 355 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 354 ----TAAGTCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTTCTGAG 303 >seq53723 Length=82647 Score = 277 bits (306), Expect = 4e-72 Identities = 312/416 (75%), Gaps = 30/416 (7%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||| ||| |||||||||| |||| |||||| || | ||||| Sbjct 478 CTTTACAACCCGAAGGCCTTCATCACTCACGCGGCATTGCTGGATCAGGGTTTCCCCCAT 537 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 538 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 597 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||| | || ||| |||||||||||| || Sbjct 598 TGGCTGATCATCCTCTCAGACCAGCTATAGATCGCAGGCTTGGTAGGCCATTACCCCACC 657 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| | ||| | | | || | | || || | ||| || | Sbjct 658 AACTACCTAATCTAACGCGGGCTGCT-CAATCG-GCGA----TAAATCTTTCCCCCTAAG 711 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | |||| | |||||||| || |||||| || ||||| || ||| || Sbjct 712 GGC--------TTATCCAGTATTAGCTACAGTTTCCCGTAGTTATTCCGAACCAATCGGT 763 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCAC-----TCGTCAGCGAAGCAGCAAGCTGC 358 | |||||| | ||||||||||||| ||||| | | | |||||| ||| Sbjct 764 ACATTCCCACGCGTTACTCACCCGTCTGCCACTAACTTATTAACCGAAGC--CAA----- 816 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 817 ----TAAGTCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTTCTGAG 868 >seq24741 Length=27080 Score = 277 bits (306), Expect = 4e-72 Identities = 312/416 (75%), Gaps = 30/416 (7%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||| ||| |||||||||| |||| |||||| || | ||||| Sbjct 478 CTTTACAACCCGAAGGCCTTCATCACTCACGCGGCATTGCTGGATCAGGGTTTCCCCCAT 537 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 538 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 597 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||| | || ||| |||||||||||| || Sbjct 598 TGGCTGATCATCCTCTCAGACCAGCTATAGATCGCAGGCTTGGTAGGCCATTACCCCACC 657 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| | ||| | | | || | | || || | ||| || | Sbjct 658 AACTACCTAATCTAACGCGGGCTGCT-CAATCG-GCGA----TAAATCTTTCCCCCTAAG 711 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | |||| | |||||||| || |||||| || ||||| || ||| || Sbjct 712 GGC--------TTATCCAGTATTAGCTACAGTTTCCCGTAGTTATTCCGAACCAATCGGT 763 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCAC-----TCGTCAGCGAAGCAGCAAGCTGC 358 | |||||| | ||||||||||||| ||||| | | | |||||| ||| Sbjct 764 ACATTCCCACGCGTTACTCACCCGTCTGCCACTAACTTATTAACCGAAGC--CAA----- 816 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 817 ----TAAGTCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTTCTGAG 868 >seq36966 Length=1316 Score = 268 bits (296), Expect = 2e-69 Identities = 305/411 (74%), Gaps = 30/411 (7%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 906 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 965 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 966 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 1025 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 1026 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCACC 1085 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| ||||| | ||| || ||||| Sbjct 1086 AACTAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGATAA-------ATCTTTC 1131 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 1132 CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGT 1191 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 1192 ACGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 1235 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1236 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 1286 >seq28440 Length=110124 Score = 268 bits (296), Expect = 2e-69 Identities = 305/411 (74%), Gaps = 30/411 (7%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 482 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 541 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 542 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 601 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 602 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCACC 661 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| ||||| | ||| || ||||| Sbjct 662 AACTAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGATAA-------ATCTTTC 707 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 708 CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGT 767 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 768 ACGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 811 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 812 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 862 >seq28439 Length=70556 Score = 268 bits (296), Expect = 2e-69 Identities = 305/411 (74%), Gaps = 30/411 (7%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 482 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 541 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 542 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 601 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 602 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCACC 661 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| ||||| | ||| || ||||| Sbjct 662 AACTAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGATAA-------ATCTTTC 707 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 708 CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGT 767 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 768 ACGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 811 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 812 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 862 >seq53056 Length=2280 Score = 105 bits (116), Expect = 2e-20 Identities = 135/181 (75%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || |||| |||| |||||||||| ||||||| Sbjct 1185 GCCTTCTGATCACCCACGTAACATTACTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 1244 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 ||||||||||| | | | || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 1245 CCACTGCTGCC-CTTTTCGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 1302 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| |||||||| | ||||||| || | || ||||| | |||||| |||||| Sbjct 1303 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 1362 Query 196 C 196 | Sbjct 1363 C 1363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221706385792