Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq36966 428 1e-117 seq28440 428 1e-117 seq28439 428 1e-117 seq54446 383 5e-104 seq53723 383 5e-104 seq24741 383 5e-104 seq53056 176 1e-41 seq13867 114 4e-23 seq5147 96.9 1e-17 seq5146 96.9 1e-17 seq11065 82.4 2e-13 seq11064 82.4 2e-13 seq21053 80.6 8e-13 >seq36966 Length=1316 Score = 428 bits (474), Expect = 1e-117 Identities = 305/349 (87%), Gaps = 1/349 (0%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1112 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 1053 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 1052 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 993 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 992 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 933 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||| | |||| |||||||||| | | |||||||||||||||||| Sbjct 932 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGC 873 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 | || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 872 AAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 813 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||| ||| |||||||||||||||||||| || | ||||||| Sbjct 812 TGCTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 765 >seq28440 Length=110124 Score = 428 bits (474), Expect = 1e-117 Identities = 305/349 (87%), Gaps = 1/349 (0%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 688 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 629 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 628 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 569 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 568 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 509 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||| | |||| |||||||||| | | |||||||||||||||||| Sbjct 508 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGC 449 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 | || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 448 AAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 389 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||| ||| |||||||||||||||||||| || | ||||||| Sbjct 388 TGCTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 341 >seq28439 Length=70556 Score = 428 bits (474), Expect = 1e-117 Identities = 305/349 (87%), Gaps = 1/349 (0%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 688 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 629 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 628 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 569 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 568 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 509 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||| | |||| |||||||||| | | |||||||||||||||||| Sbjct 508 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGC 449 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 | || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 448 AAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 389 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||| ||| |||||||||||||||||||| || | ||||||| Sbjct 388 TGCTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 341 >seq54446 Length=153271 Score = 383 bits (424), Expect = 5e-104 Identities = 285/332 (86%), Gaps = 1/332 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| |||||| |||||||| ||||| ||| ||||||| | ||||| |||| | Sbjct 493 CCCGCGTTAGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCTGCGATCTATAGCTG 552 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||| Sbjct 553 GTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 612 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||||||| |||||||| ||| |||||| |||||| |||||||||| ||| Sbjct 613 AGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCAATGCCGCGTGAGTGAT 672 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 |||||||||||||| |||||||||| | ||| ||||||| |||||||||| ||| || Sbjct 673 GAAGGCCTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGATGATGACGGTACCTGACGAAT 732 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| | || Sbjct 733 AAGCTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGAGCTAGCGTTGTTCG 792 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||||| |||||||||||| ||||||| || Sbjct 793 GAATTACT-GGGCGTAAAGGGCGCGTAGGCGG 823 >seq53723 Length=82647 Score = 383 bits (424), Expect = 5e-104 Identities = 285/332 (86%), Gaps = 1/332 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| |||||| |||||||| ||||| ||| ||||||| | ||||| |||| | Sbjct 678 CCCGCGTTAGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCTGCGATCTATAGCTG 619 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||| Sbjct 618 GTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 559 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||||||| |||||||| ||| |||||| |||||| |||||||||| ||| Sbjct 558 AGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCAATGCCGCGTGAGTGAT 499 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 |||||||||||||| |||||||||| | ||| ||||||| |||||||||| ||| || Sbjct 498 GAAGGCCTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGATGATGACGGTACCTGACGAAT 439 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| | || Sbjct 438 AAGCTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGAGCTAGCGTTGTTCG 379 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||||| |||||||||||| ||||||| || Sbjct 378 GAATTACT-GGGCGTAAAGGGCGCGTAGGCGG 348 >seq24741 Length=27080 Score = 383 bits (424), Expect = 5e-104 Identities = 285/332 (86%), Gaps = 1/332 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| |||||| |||||||| ||||| ||| ||||||| | ||||| |||| | Sbjct 678 CCCGCGTTAGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCTGCGATCTATAGCTG 619 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||| Sbjct 618 GTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 559 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||||||| |||||||| ||| |||||| |||||| |||||||||| ||| Sbjct 558 AGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCAATGCCGCGTGAGTGAT 499 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 |||||||||||||| |||||||||| | ||| ||||||| |||||||||| ||| || Sbjct 498 GAAGGCCTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGATGATGACGGTACCTGACGAAT 439 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| | || Sbjct 438 AAGCTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGAGCTAGCGTTGTTCG 379 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||||| |||||||||||| ||||||| || Sbjct 378 GAATTACT-GGGCGTAAAGGGCGCGTAGGCGG 348 >seq53056 Length=2280 Score = 176 bits (194), Expect = 1e-41 Identities = 228/308 (74%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | |||||| Sbjct 1362 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAG 1303 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || | | | ||||||||||| Sbjct 1302 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCGAAAAG-GGCAGCAGTGG 1245 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT--GAAGGC 343 ||||||| ||||||||| ||||| |||| || || | |||| | ||| |||||| Sbjct 1244 AGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGTGATCAGAAGGC 1185 Query 344 CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAG 400 | | ||||||||| | || ||||||| |||||| | |||||||| | |||| Sbjct 1184 TTAATTGCTGTAAAGCTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAG 1125 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 ||| | |||||| ||||||||||| |||||||||||| || ||||||| ||||| || | Sbjct 1124 CCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGCAT 1065 Query 461 TTACTGGG 468 | |||||| Sbjct 1064 TGACTGGG 1057 >seq13867 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 82/93 (88%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || ||||||| ||||| || | | |||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGCATTGACTG 61 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| |||||||||||||||||||||| |||||| Sbjct 62 GGG-GTAAAGGGTGCGTAGGTGGTTTGTTAAGT 93 >seq5147 Length=127 Score = 96.9 bits (106), Expect = 1e-17 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || ||||||| ||||| || | | ||| ||| |||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGCATTGACT-GGGTGTAA 59 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| ||||||||||||| |||||| Sbjct 60 AGGGGGCGTAGGTGGTTTGTTAAGT 84 >seq5146 Length=127 Score = 96.9 bits (106), Expect = 1e-17 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || ||||||| ||||| || | | ||| ||| |||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGCATTGACT-GGGTGTAA 59 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| ||||||||||||| |||||| Sbjct 60 AGGGCGCGTAGGTGGTTTGTTAAGT 84 >seq11065 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 423 AGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCG 482 || |||||||||||| || ||||||| ||||| || | | ||| ||| |||||||||||| Sbjct 1 AGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCG 59 Query 483 TAGGTGGTTTCTTAAGT 499 |||| ||||| |||||| Sbjct 60 TAGGGGGTTTGTTAAGT 76 >seq11064 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 423 AGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCG 482 || |||||||||||| || ||||||| ||||| || | | ||| ||| |||||||||||| Sbjct 1 AGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCG 59 Query 483 TAGGTGGTTTCTTAAGT 499 |||| ||||| |||||| Sbjct 60 TAGGCGGTTTGTTAAGT 76 >seq21053 Length=127 Score = 80.6 bits (88), Expect = 8e-13 Identities = 63/74 (85%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 |||||||||||| || ||||||| ||||| || | | ||| ||| ||||||||||||||| Sbjct 3 CGCGGTAATACGGAGAGGGCTAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAG 61 Query 486 GTGGTTTCTTAAGT 499 || |||| |||||| Sbjct 62 GTTGTTTGTTAAGT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496750231808