Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq52966 154 3e-35 seq21928 140 6e-31 seq14934 84.2 4e-14 >seq52966 Length=2273 Score = 154 bits (170), Expect = 3e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||| Sbjct 18 TCGTGCTGGGGATAGATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGC 77 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||||||||||||||||||||||| Sbjct 78 GAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 117 >seq21928 Length=162 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 133 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 74 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 73 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 18 >seq14934 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| ||| |||||| ||| | |||||||||||||||| ||||| Sbjct 44 CCTGGGCCGATAGGTCCGGGGAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 103 Query 251 CAATTATTGCTCTTCAACGAGGAA 274 |||||||| |||||||||||||| Sbjct 104 TAATTATTGATCTTCAACGAGGAA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946662539776