Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq54446 320 6e-85 seq28082 297 6e-78 seq24822 291 3e-76 seq13003 102 3e-19 seq23621 95.1 4e-17 seq22785 89.7 2e-15 seq22784 89.7 2e-15 seq18871 89.7 2e-15 seq5284 82.4 3e-13 >seq54446 Length=153271 Score = 320 bits (354), Expect = 6e-85 Identities = 366/484 (76%), Gaps = 12/484 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||||| ||| | | ||||||||||||| |||||||| ||| Sbjct 3061 CGAGTCTTAATAGGGCGACCAAGTTACGTGCATTAGACCCGAAACCGGGTGATCTATCCA 3120 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| |||||||||||||||||| ||||||| ||||||| |||| |||||||| Sbjct 3121 TGGGCAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCGACTACCGTTGAAAAG 3180 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||| |||||| |||||| ||||||||||||||||| |||||| |||||||||||||||| Sbjct 3181 GTAGCGGATGACCTGTGGATAGGGGTGAAAGGCTAATCAAACTCGGAAATAGCTGGTTCT 3240 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAG-TATCACCATCGGGGGTAGAGCACTGTTAT 238 | ||||||||||| ||||||||| || || || || ||||||||||||||| Sbjct 3241 CCGCGAAAACTATTGAGGTAGTGCGTCGAGCGATTACTCCAGGGGGTAGAGCACTGGATG 3300 Query 239 GGCTAGGGGGTCATTGCGA--CTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTT 296 |||||||||| |||| ||||||||||| |||||||||||| | ||| | Sbjct 3301 GGCTAGGGGG---AAGCGATTCTTACCAAACCCAACCAAACTCCGAATACCTGACAG-TA 3356 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | | ||| || || ||||||||||||||| | ||| ||| || | || || Sbjct 3357 CAGCTCGGCAGACAGACGGTGGGTGCTAAGGTCCATCGTCGAAAGGGAAACAGCCCTAAC 3416 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 || |||||| ||| || | | | |||||| | || || || || | ||||| Sbjct 3417 CGCCATCTAAGGTCCCCAAGTCATAACTAAGTGGGA--AAGGATGTGGGACGACCAAGAC 3474 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||| |||| |||||||| |||||||||| || |||||||| ||||||||||||||| || Sbjct 3475 AGCCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGGT 3533 Query 477 CGAG 480 | || Sbjct 3534 CTAG 3537 >seq28082 Length=2048 Score = 297 bits (328), Expect = 6e-78 Identities = 361/482 (75%), Gaps = 14/482 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| || ||| || | ||||||||||||| ||||||||| ||| Sbjct 1563 CGAGTCTGAATAGGGCGTCAAGTTCGTTGTAT-TAGACCCGAAACCTAGTGATCTAGCCA 1621 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| |||||||| | ||||||| |||||| |||||||||| Sbjct 1622 TGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGCCTGTTGAAAAA 1681 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 1682 GGCTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCT 1741 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | ||||| |||||||||| ||||| | | || ||| ||||||||||||||| Sbjct 1742 CCGCGAAAGATATTTAGGTATCGCCTCGGATGAAT-ACCTCAGGGGGTAGAGCACTGGAT 1800 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||| | | || ||||||||||| |||||||||||| | ||| | Sbjct 1801 GGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCTGAGAGTACT 1860 Query 298 ACCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||||| | ||| ||||||||| |||||| |||||| || || ||||| Sbjct 1861 ATC-CGGGAGTCACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGA 1917 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||||||| || | ||||||| | || || || || | | || | Sbjct 1918 CCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGA--AAGGATGTGGGAATCCCAAAA 1975 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| | Sbjct 1976 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGG 2034 Query 476 TC 477 || Sbjct 2035 TC 2036 >seq24822 Length=2082 Score = 291 bits (322), Expect = 3e-76 Identities = 360/482 (75%), Gaps = 14/482 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| || ||| || | ||||||||||||| ||||||||| ||| Sbjct 1597 CGAGTCTTAATAGGGCGCCAAGTTCGTTGTAT-TAGACCCGAAACCTAGTGATCTAGCCA 1655 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| |||||||| | ||||||| |||||| |||||||||| Sbjct 1656 TGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAA 1715 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 1716 GACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCT 1775 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | ||||| |||||||||| ||||| | | || ||| ||||||||||||||| Sbjct 1776 CCGCGAAAGATATTTAGGTATCGCCTCGGATGAAT-ACCTCAGGGGGTAGAGCACTGGAT 1834 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||| | | || ||||||||||| |||||||||||| | ||| | Sbjct 1835 GGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCTGAGAGTACT 1894 Query 298 ACCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||||| | ||| ||||||||| |||||| |||||| || || ||||| Sbjct 1895 ATC-CGGGAGTCACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGA 1951 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||||||| || | ||||||| | || || || || | | || | Sbjct 1952 CCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGA--AAGGATGTGGGAATCCCAAAA 2009 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| | Sbjct 2010 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGG 2068 Query 476 TC 477 || Sbjct 2069 TC 2070 >seq13003 Length=122 Score = 102 bits (112), Expect = 3e-19 Identities = 98/124 (79%), Gaps = 5/124 (4%) Strand=Plus/Minus Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 ||||| |||| |||||||| |||||||| | ||||||| |||||| ||||||| Sbjct 122 CCATGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGCCTGTTGAA 63 Query 117 AAATTAGGG---GATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCT 173 ||| ||| ||||| ||||| |||||||||||||| || |||||| |||||||||| Sbjct 62 AAA--AGGCTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCT 5 Query 174 GGTT 177 |||| Sbjct 4 GGTT 1 >seq23621 Length=127 Score = 95.1 bits (104), Expect = 4e-17 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 69 TGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGAT 128 |||| || | ||||||| ||| ||| |||||||| |||||| | ||| ||||| Sbjct 127 TGAAAGTACTTTAACACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGAT 68 Query 129 GAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAA 188 |||| || | ||||||||||||||||| ||| ||| | ||||| || |||| ||||| Sbjct 67 GAGCGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAAT 8 Query 189 CTATTTA 195 ||||||| Sbjct 7 CTATTTA 1 >seq22785 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 ||||| ||| ||| |||||||| |||||| | ||| |||||||| || | ||| Sbjct 1 ACACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAG 60 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 ||| |||||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| Sbjct 61 GGGGGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGA 120 Query 202 GC 203 || Sbjct 121 GC 122 >seq22784 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 ||||| ||| ||| |||||||| |||||| | ||| |||||||| || | ||| Sbjct 1 ACACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAG 60 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 ||| |||||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| Sbjct 61 GGGCGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGA 120 Query 202 GC 203 || Sbjct 121 GC 122 >seq18871 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 ||||| ||| ||| |||||||| |||||| | ||| |||||||| || | ||| Sbjct 127 ACACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAG 68 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 ||| |||||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| Sbjct 67 GGGAGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGA 8 Query 202 GC 203 || Sbjct 7 GC 6 >seq5284 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 |||||||| || | ||||||||||||||||| ||| ||| | ||||| ||||||| | Sbjct 117 GGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTTCTCTAC 58 Query 184 GAAAACTATTTAGGTAGTGC 203 |||| |||||||||||| || Sbjct 57 GAAATCTATTTAGGTAGAGC 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688641287168