Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq54446 188 1e-45 seq28082 111 3e-22 seq24822 105 1e-20 >seq54446 Length=153271 Score = 188 bits (208), Expect = 1e-45 Identities = 188/241 (78%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| || ||||||||||||| | | |||||||||||||||| ||| ||||| | Sbjct 2443 AGGGCATCTGATGGATGCCTTGGCATTAAGAGGCGATGAAGGACGTGGTACGCTGCGAAA 2502 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| | |||||| | || |||| ||||||||||| ||| ||||||||||||||||| | Sbjct 2503 AGCCGTGGGGAG-GTGCGAACAACCTTTGATCCGCGGATATCCGAATGGGGAAACCCACC 2561 Query 121 CC---TTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | | ||| | ||||| |||||||||||||| | ||| ||| | ||||||| Sbjct 2562 ACAAGTGTGGTACCTTGCA--CTGAATACATAGGTGTAAGGAGCAAACCTAGGGAACTGA 2619 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 |||||||||||| || |||||| || ||||||||||| ||| ||||||||||||||| Sbjct 2620 AACATCTAAGTACCTAGAGGAAAGGACATCAACCGAGACTCCGTTAGTAGTGGCGAGCGA 2679 Query 238 A 238 | Sbjct 2680 A 2680 >seq28082 Length=2048 Score = 111 bits (122), Expect = 3e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||| | | |||||||||||||||| || |||||||||| | ||| Sbjct 870 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCCGTGGG 929 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || | ||||||||||| ||||||||||||||||||||| Sbjct 930 GAG-CTGCGAAGAAGCTTTGATCCGCGGATTTCCGAATGGGGAAACCC 976 Score = 98.7 bits (108), Expect = 2e-18 Identities = 83/101 (82%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | |||||||| | | ||||||||||||||||||| ||| ||| Sbjct 1090 CTGAATACATAGGAGGTTTCAAGCGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGG 1149 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||| || |||||| |||| ||| |||||||||||||||| Sbjct 1150 AAAGGACATCAACAGAGACTCCGTTAGTAGTGGCGAGCGAA 1190 >seq24822 Length=2082 Score = 105 bits (116), Expect = 1e-20 Identities = 139/187 (74%), Gaps = 13/187 (7%) Strand=Plus/Plus Query 139 CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | |||||||| | | ||||||||||||||||||| ||| ||| Sbjct 1124 CTGAATACATAGGAGGTTTCAAGCGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGG 1183 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGA 257 ||| || ||||||||||| ||| |||||||||||||||| ||| || | | Sbjct 1184 AAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGAACGCGGACCAG-----GCCA 1238 Query 258 GATAGTTGAAT-TGA---TAGTGGAATC-CTCTGGAAATAGGAGCCATAGCGGGTGATAG 312 | | | ||| ||| | ||||||| || ||||| ||||| ||| ||||||||| Sbjct 1239 GTCA--TCAATGTGAGACAATTGGAATCTGTCAGGAAAGCAGAGCCTTAGAGGGTGATAG 1296 Query 313 CCCCGTA 319 ||||||| Sbjct 1297 CCCCGTA 1303 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||||| | |||||| ||||||||| || |||||||||| | ||| Sbjct 930 GGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGGG 989 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| | ||||||||||||||||||||| Sbjct 990 GAG-CTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 1036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917878881472