Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq53477 367 4e-99 seq19687 221 4e-55 seq17382 221 4e-55 seq11520 221 4e-55 seq9539 221 4e-55 seq1632 210 7e-52 seq593 111 5e-22 seq7263 89.7 2e-15 >seq53477 Length=5923 Score = 367 bits (406), Expect = 4e-99 Identities = 277/341 (81%), Gaps = 41/341 (12%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 4456 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 4515 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4516 CAACAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 4575 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4576 TGGGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 4635 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAG------------------------------ 443 |||||||||||||||||||||||||||||| Sbjct 4636 ATGACGAGGCATTTGGCTACCTTAAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 4695 Query 444 -----------TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||| ||||||||| Sbjct 4696 NNNNNNNNNNNNNNNNNNNNCTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTT 4755 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||| Sbjct 4756 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 4796 Score = 147 bits (162), Expect = 7e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 4124 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 4183 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 4184 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCAACC 4237 >seq19687 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 68 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 67 GTTCCTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACT 8 Query 509 GGGCAGA 515 ||||||| Sbjct 7 GGGCAGA 1 >seq17382 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 60 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 GAGCCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTC 120 Query 501 AGAGCAC 507 ||||||| Sbjct 121 AGAGCAC 127 >seq11520 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 68 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 67 GTTGCTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACT 8 Query 509 GGGCAGA 515 ||||||| Sbjct 7 GGGCAGA 1 >seq9539 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 60 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 GTTTCTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACT 120 Query 509 GGGCAGA 515 ||||||| Sbjct 121 GGGCAGA 127 >seq1632 Length=119 Score = 210 bits (232), Expect = 7e-52 Identities = 118/119 (99%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 60 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCAC 119 >seq593 Length=127 Score = 111 bits (122), Expect = 5e-22 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 118 CTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCCCCTGA 59 Query 107 CAATGTCATCAACC 120 | ||||| |||||| Sbjct 58 CTATGTCCTCAACC 45 >seq7263 Length=103 Score = 89.7 bits (98), Expect = 2e-15 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 62 TTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1 TTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCAACC 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634272154816