Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq54446 394 3e-107 seq54080 370 4e-100 seq53321 145 3e-32 seq55600 105 2e-20 >seq54446 Length=153271 Score = 394 bits (436), Expect = 3e-107 Identities = 428/565 (76%), Gaps = 21/565 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||||| || ||| ||| || |||||| || ||||| || Sbjct 4671 TCGACTTGTCTGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCATCAGTTGATTTCC 4612 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||| ||| ||| ||||||||||||| ||||||||| | |||||||||| Sbjct 4611 GACCAACCTGAGCCTACCATTGCGCGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCAG 4553 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| ||| |||| | | ||| | | | |||||||||| | Sbjct 4552 TCAAACTACCCACCATGCAGGGTCCTGGATCAGGATAACTGATCTCAGTTAGATATCAAA 4493 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || ||| |||||||||||| ||| |||||| || || ||| ||| ||| || Sbjct 4492 GACAACCAGGGTGGTATTTCAAGGACGCCTCCACGACTGCTGGCGCAATCGCTTCAAAGG 4433 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||||||||||||||||||| | || ||| ||| | | ||||| |||| ||||| | Sbjct 4432 CTCCCACCTATCCTACACAAGTTGTCCCTAATACCACTGCAAAGCTGTAGTAAAGGTGCA 4373 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| ||||| ||| | ||||| || | | ||||||||| | Sbjct 4372 CGGGGTCTTTCCGTCTGACCGCGGGAACTCCGTATCTTCACGGAGAATCCAATTTCACTG 4313 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | ||| | ||||||| ||| | |||||||||||||||||||||||||||||||||| Sbjct 4312 AGTTGGTGTTGGAGACAGTGGGGAAATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 4253 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 4252 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 4193 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| ||| ||| | ||| ||| |||| ||||||||||||||||| Sbjct 4192 AAT--------TCA--------GTGCT-TGCACAC--CTCCTTTTAACCTTCCAGCACCG 4152 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| || ||||| ||| Sbjct 4151 GGCAGGCGTCAGACCCTATACGTCG 4127 >seq54080 Length=2557 Score = 370 bits (410), Expect = 4e-100 Identities = 424/566 (75%), Gaps = 24/566 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| ||| |||| || | | |||| | Sbjct 814 TCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAAC-GATTTC 872 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | |||||||||||| ||||||||| | ||||||||| Sbjct 873 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCA 931 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||||||| || ||||||| || | | | || | ||||||||||||| Sbjct 932 GTCAAACTGCCCACCATGCGCTGTCCCGGTTCCCGCTGAGGGAACGCGGTTAGATATCCA 991 Query 180 CTACGGTCAGAGTGGTATTTCA-ACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | || ||||||||||| | || |||||| | || ||| | || ||| | Sbjct 992 TAACCATTAGGGTGGTATTTCACATTGCGGCTCCACCATGGCTGGCGCCACGGCTTCAAA 1051 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | || |||||||| |||||||||| | ||||| ||| | |||||| ||| ||||| Sbjct 1052 GCCTACCACCTATTCTACACAAACAGTCACGAATACCAGCGCAAAGCTACAGTAAAGGTG 1111 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 1112 CACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCAC 1171 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || || | |||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct 1172 TGAGTCTATGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTAC 1231 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 1232 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCT 1291 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 |||||| || | | | ||| ||||||||||||||| |||| Sbjct 1292 TCAATT----------CAGAGCTTG---------CACTCCTCCTCTTAACCTTCCGGCAC 1332 Query 538 CGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| || ||||| || Sbjct 1333 CGGGCAGGCGTCAGACCCTATACGTC 1358 Score = 183 bits (202), Expect = 1e-43 Identities = 223/299 (75%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| ||| |||| || | | |||| | Sbjct 231 TCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAAC-GATTTC 289 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | |||||||||||| ||||||||| | ||||||||| Sbjct 290 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCA 348 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||||||| || ||||||| || ||| | || | ||||||||||||| Sbjct 349 GTCAAACTGCCCACCATGCGCTGTCCCGGTTCCGGATGACGGAACGCGGTTAGATATCCA 408 Query 180 CTACGGTCAGAGTGGTATTTCA-ACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | || ||||||||||| | ||||||||| || || ||| || || ||| | Sbjct 409 TAACCATTAGGGTGGTATTTCACATTTCGACTCCACCACGGCTGGCGCCGCAGCTTCAAA 468 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 |||| |||||||| |||||||||| | ||||| ||| | |||||| ||| ||||| Sbjct 469 GTCTACCACCTATTCTACACAAACAGTCACGAATACCAGCGCAAAGCTACAGTAAAGGT 527 Score = 132 bits (146), Expect = 2e-28 Identities = 121/156 (78%), Gaps = 19/156 (12%) Strand=Plus/Plus Query 408 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTT 467 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1780 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 1839 Query 468 TACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAAC 527 ||| |||||||||||| || | | | ||| |||||||||| Sbjct 1840 TACCGGGGCTTCAATT----------CAGAGCTTG---------CACTCCTCCTCTTAAC 1880 Query 528 CTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||| |||||||||||||||||| || ||||| || Sbjct 1881 CTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTC 1916 >seq53321 Length=7520 Score = 145 bits (160), Expect = 3e-32 Identities = 106/123 (86%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| ||| || | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 411 AATTTCACTAGGCTAGTACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 470 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 471 GAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTA 530 Query 470 CTG 472 ||| Sbjct 531 CTG 533 >seq55600 Length=68428 Score = 105 bits (116), Expect = 2e-20 Identities = 114/147 (78%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| ||| |||| || | | |||| | Sbjct 151 TCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAAC-GATTTC 93 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | |||||||||||| ||||||| ||| ||||||||| Sbjct 92 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCA 34 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 || ||||| ||||||| || ||||||| Sbjct 33 GTCAAACTGCCCACCATGCGCTGTCCC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701434024192