Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq36966 199 8e-49 seq28440 199 8e-49 seq28439 199 8e-49 seq54446 196 1e-47 seq53723 196 1e-47 seq24741 196 1e-47 >seq36966 Length=1316 Score = 199 bits (220), Expect = 8e-49 Identities = 230/313 (73%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | ||||| || Sbjct 838 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTACCGTCA------------- 884 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | |||||| ||||||| || ||| |||||||| |||||| Sbjct 885 ------TTATCTTCCCGCACAAAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGC 937 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| || || |||||| |||||||||| |||||||||||||||||| Sbjct 938 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 997 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||||||| |||||||||||| ||||||||| || | |||||||||| | ||| || Sbjct 998 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1057 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||||||||| | || |||| ||||| |||| || ||| | | Sbjct 1058 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 1117 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 1118 GCGATAAATCTTT 1130 >seq28440 Length=110124 Score = 199 bits (220), Expect = 8e-49 Identities = 230/313 (73%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | ||||| || Sbjct 414 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTACCGTCA------------- 460 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | |||||| ||||||| || ||| |||||||| |||||| Sbjct 461 ------TTATCTTCCCGCACAAAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGC 513 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| || || |||||| |||||||||| |||||||||||||||||| Sbjct 514 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 573 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||||||| |||||||||||| ||||||||| || | |||||||||| | ||| || Sbjct 574 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 633 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||||||||| | || |||| ||||| |||| || ||| | | Sbjct 634 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 693 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 694 GCGATAAATCTTT 706 >seq28439 Length=70556 Score = 199 bits (220), Expect = 8e-49 Identities = 230/313 (73%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | ||||| || Sbjct 414 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTACCGTCA------------- 460 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | |||||| ||||||| || ||| |||||||| |||||| Sbjct 461 ------TTATCTTCCCGCACAAAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGC 513 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| || || |||||| |||||||||| |||||||||||||||||| Sbjct 514 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 573 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||||||| |||||||||||| ||||||||| || | |||||||||| | ||| || Sbjct 574 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 633 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||||||||| | || |||| ||||| |||| || ||| | | Sbjct 634 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 693 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 694 GCGATAAATCTTT 706 >seq54446 Length=153271 Score = 196 bits (216), Expect = 1e-47 Identities = 213/286 (74%), Gaps = 20/286 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | |||||| || || Sbjct 761 GGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCGTCAGGTACCGTCATCATC-------- 710 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 |||||| | |||||| ||||||| ||| || |||||||| |||||| Sbjct 709 -----------TTCCCTGACAAAAGAGCTTTACAACCCGAAGG-CCTTCATCACTCACGC 662 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||||| |||| | || |||||| |||||||||| |||||||||||||||||| Sbjct 661 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 602 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | |||| || Sbjct 601 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATAGAT 542 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 || ||||| ||| |||| ||||||| || |||||||||| ||||| Sbjct 541 CGCAGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTAACGC 496 >seq53723 Length=82647 Score = 196 bits (216), Expect = 1e-47 Identities = 213/286 (74%), Gaps = 20/286 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | |||||| || || Sbjct 410 GGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCGTCAGGTACCGTCATCATC-------- 461 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 |||||| | |||||| ||||||| ||| || |||||||| |||||| Sbjct 462 -----------TTCCCTGACAAAAGAGCTTTACAACCCGAAGG-CCTTCATCACTCACGC 509 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||||| |||| | || |||||| |||||||||| |||||||||||||||||| Sbjct 510 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 569 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | |||| || Sbjct 570 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATAGAT 629 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 || ||||| ||| |||| ||||||| || |||||||||| ||||| Sbjct 630 CGCAGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTAACGC 675 >seq24741 Length=27080 Score = 196 bits (216), Expect = 1e-47 Identities = 213/286 (74%), Gaps = 20/286 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | |||||| || || Sbjct 410 GGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCGTCAGGTACCGTCATCATC-------- 461 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 |||||| | |||||| ||||||| ||| || |||||||| |||||| Sbjct 462 -----------TTCCCTGACAAAAGAGCTTTACAACCCGAAGG-CCTTCATCACTCACGC 509 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||||| |||| | || |||||| |||||||||| |||||||||||||||||| Sbjct 510 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 569 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | |||| || Sbjct 570 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATAGAT 629 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 || ||||| ||| |||| ||||||| || |||||||||| ||||| Sbjct 630 CGCAGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTAACGC 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068193541504