Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq53173 374 3e-101 seq6618 168 2e-39 seq17191 154 4e-35 seq7336 154 4e-35 seq1734 154 4e-35 seq18730 140 1e-30 seq13022 100 9e-19 seq6617 78.8 3e-12 seq6103 75.2 3e-11 >seq53173 Length=1818 Score = 374 bits (414), Expect = 3e-101 Identities = 377/498 (76%), Gaps = 73/498 (15%) Strand=Plus/Minus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| Sbjct 1175 AATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGG 1116 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| Sbjct 1115 AATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCG 1056 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC----AAGG-------CCA 248 ||||||||||||||||||||||||||||| | |||||| | | |||| | Sbjct 1055 AAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGTCCCCACGAAGGAGGACATGAA 996 Query 249 TGCGATTCGTTA-AGTTATTATGAATCACCA--AGG-----AGCC---CCGAAGGGCGTT 297 |||||| || | ||||| |||||||||||| ||| |||| | | || | Sbjct 995 TGCGATCCGAAAGAGTTACTATGAATCACCAGGAGGTGTGTAGCCATTGCTGACTACGCT 936 Query 298 GGTTTTTTATCTAATAAATACACCCCT-------TCCGAAG------------------- 331 ||||||| | |||||||||||| |||| | ||| | Sbjct 935 GGTTTTTAACCTAATAAATACATCCCTCTGCGCATGCGAGGACGGAGCCGTGAAGCCCCG 876 Query 332 ----------TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 ||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 875 CCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGT 816 Query 382 AG--------------TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 || ||| || ||||||||||| ||||||||||||||||||||| | Sbjct 815 AGGTAAAAAAAAGACAAAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCC 756 Query 428 GCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||| || | ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 755 GCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 696 Query 487 GCATATGACTACTGGCAG 504 |||||||||||||||||| Sbjct 695 GCATATGACTACTGGCAG 678 >seq6618 Length=127 Score = 168 bits (186), Expect = 2e-39 Identities = 107/115 (93%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 87 |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 13 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGGAATTTGCG 72 Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 73 CGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAAT 127 >seq17191 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTTC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq7336 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTGC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq1734 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTCC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq18730 Length=85 Score = 140 bits (154), Expect = 1e-30 Identities = 82/85 (96%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCC 60 Query 118 GTTTCTCAGGCTCCCTCTCCGGAAT 142 |||||||||||||||||||||||| Sbjct 61 ATTTCTCAGGCTCCCTCTCCGGAAT 85 >seq13022 Length=127 Score = 100 bits (110), Expect = 9e-19 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||| | | | |||| ||||||| |||||||||||||||| Sbjct 84 GTACTCATTCCAATTACAAGGCTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 25 Query 59 CTCCCCGTGTCGGGATTGGGTAAT 82 |||||||||||||||||||||||| Sbjct 24 CTCCCCGTGTCGGGATTGGGTAAT 1 >seq6617 Length=67 Score = 78.8 bits (86), Expect = 3e-12 Identities = 51/55 (93%), Gaps = 1/55 (2%) Strand=Plus/Plus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAAT 82 |||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 13 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAAT 67 >seq6103 Length=143 Score = 75.2 bits (82), Expect = 3e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509542968832