Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq54491 210 6e-50 seq27440 199 1e-46 >seq54491 Length=272697 Score = 210 bits (232), Expect = 6e-50 Identities = 443/653 (68%), Gaps = 16/653 (2%) Strand=Plus/Minus Query 37692 ACGGCGTCGAAAAAGAA-GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAG 37750 |||||| || |||||| ||||| || ||| ||| || |||| |||||||| | ||| Sbjct 166579 ACGGCG-CGGAAAAGACCGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAG 166521 Query 37751 CTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGC 37810 | |||||||| | | || |||||| | | || || || || ||| | Sbjct 166520 ATGCGCTTCAATCTGGCATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAA 166461 Query 37811 TCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAG 37870 |||||| | ||||||||||||||||| | ||||| || ||| || || || | Sbjct 166460 TCCATCGTACATGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAA 166401 Query 37871 GAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATT 37930 || | ||||| |||| |||||||| |||||||||| || |||||||||||||| | Sbjct 166400 GACCACGGCGTCTCGATCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTC 166341 Query 37931 TACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCA 37990 ||||| |||| |||||||||||| | | ||||| | |||||||||||| || Sbjct 166340 TACGGATCGCAGTGGCGCTCGTGGCCTGCGCCGGACGGCCGCAGCATCGACCAGATTTCA 166281 Query 37991 TGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGG 38050 | |||| |||| ||||||| ||||||| || ||| | || || || ||| Sbjct 166280 AATCTGATCGAGATGATCCGCAAAAATCCGGATTCACGTCGCCTGATCGTCAGTGCGTGG 166221 Query 38051 AATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTAT 38110 ||| || || | ||| ||||| |||||| |||||||| | | || ||||||||| Sbjct 166220 AATCCCGCCGACGTCGACAAGATGGCGCTGCCTCCGTGTCACTGCCTGTTCCAGTTCTAT 166161 Query 38111 GTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGG 38170 ||||| ||||| ||||| ||| | | ||||| || | || ||| | || Sbjct 166160 GTCGCTAACGGAAAATTGTCCTGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGC 166101 Query 38171 TTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCAT-ATGGTAGCCCAACAATGCGA 38229 ||||||| ||||||||| ||| |||||| |||| ||| ||||| || | | | || Sbjct 166100 GTGCCGTTCAACATCGCGTCCTATGCGCTGCTGAC-CATGATGGTGGCGC----AGGTGA 166046 Query 38230 CTTGGATG----TCGGTGAACTCAT--TTTCACCGGCGGCGACGTCCATTTGTACAAAAA 38283 || || || ||| || || | ||| | |||||| | ||| | || || Sbjct 166045 CTGGGCTGAAGCCCGGCGACTTCGTGCATTCGC--TCGGCGATGCGCATCTCTATTCGAA 165988 Query 38284 TCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGA 38336 ||||| || || || ||||| || |||||| | |||| |||||||||| Sbjct 165987 CCATCTCGATCAGGCCCGGCTGCAACTCACGCGCCTGACGCGTCCGCTGCCGA 165935 >seq27440 Length=426762 Score = 199 bits (220), Expect = 1e-46 Identities = 495/738 (67%), Gaps = 20/738 (3%) Strand=Plus/Plus Query 37692 ACGGCGTCGAAAAAGAAGACCGAACGG----GCGTCGGCACGCTGTCGGTGTTCGGCCGC 37747 |||||||||| ||||||||| ||| || ||||||||| ||||| ||||||| Sbjct 328866 ACGGCGTCGA----GAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCAT 328921 Query 37748 CAGCTCCGCTTCAA-CTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATAT 37806 || | |||||||| || | | || || ||| | |||| || || ||| | Sbjct 328922 CAAATGCGCTTCAATCTGTCGACC-GGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTT 328980 Query 37807 CCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTT 37866 | ||| | |||| ||||| ||||| | || ||||| || ||| || || | Sbjct 328981 GAAGGCGATCGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCT 329040 Query 37867 GCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCC 37926 || || || ||||| || || ||||| ||||||||||| | || |||||||||||||| Sbjct 329041 GCGCGACAACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCC 329100 Query 37927 GATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGAT 37986 | | || ||| || |||||||| ||| || | ||||| | |||||||||||| Sbjct 329101 GGTCTATGGCCATCAGTGGCGCTCATGGCCGGCCCCGGACGGCCGCAGCATCGACCAGAT 329160 Query 37987 CGCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGC 38046 ||| || || || |||||| || |||||| | || ||||| ||| | || || Sbjct 329161 CGCCAACGTCGTGGACATGATCAAGCGCAATCCGGACTCGCGCCGCCTGATCGTCTCGGC 329220 Query 38047 TTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTT 38106 |||||| || || | ||| ||||| |||||||||||| |||| | || ||||| Sbjct 329221 GTGGAATCCGGCCGAGGTCGACAAGATGGCGCTGCCGCCGTGCCATTGCCTGTTCCAGTT 329280 Query 38107 CTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTT- 38165 ||| |||||||||||| | |||| || | | |||||||||| | |||| || Sbjct 329281 CTACGTCGCCAACGGCAAGCTGTCCTGTCAGCTCTATCAGCGCTCCGCCG--ACGTCTTC 329338 Query 38166 -TAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCAT-ATGGTAGCCCAACA 38223 | || |||| || |||||||| |||| ||||| | || ||| ||||| || || Sbjct 329339 CTCGGCGTGCCCTTCAACATCGCCTCCTACTCGCTGCTCAC-CATGATGGTGGCGCAGGT 329397 Query 38224 ATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAA 38283 || || | ||| || || | | |||||||| ||| | || || Sbjct 329398 CACCGGTCTGAAGCCCGGCGATTTCGTGCATTCGTTCGGCGACGCGCATCTCTATTCCAA 329457 Query 38284 TCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGT 38343 || ||||| || ||||| || ||||| || |||| |||||| || ||||| | || Sbjct 329458 CCACCTGGAGCAGGCGAAGCTCCAGCTCACCCGCGCGCCGCGAGCGTTGCCGGTG-ATGC 329516 Query 38344 GC-TGAA-ACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTGAAATCGTC 38401 || | || | || | | | | ||||| || | ||| || || ||| ||||| Sbjct 329517 GCATCAACCCTGAGGTCAAGGAC-ATCTTCTCCTTCCGCTTCGAGGATTTCGAACTCGTC 329575 Query 38402 GGCTACGATCCGCATCCG 38419 |||||||||||||| ||| Sbjct 329576 GGCTACGATCCGCACCCG 329593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130551973298300