Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq32030 87.8 6e-13 >seq32030 Length=166927 Score = 87.8 bits (96), Expect = 6e-13 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 2677 GCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCT 2736 || ||||| ||||| ||||| || ||||| ||||| || |||| || || | | || Sbjct 142079 GCCAACTCGATCCTGATCAAGGTCAACCAGATCGGCACGCTGACCGAGACGCTCGCTGCC 142138 Query 2737 ATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACT 2796 |||| ||||| | | || || ||||| | || | || ||||| || || || || Sbjct 142139 GTCGAGATGGCCCACAAGGCCGGCTACACCTCGGTGATGTCGCACCGCTCCGGCGAGACC 142198 Query 2797 GAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGT 2856 || ||||| || || || || | || || || || || || || || ||||| || Sbjct 142199 GAGGATTCCACCATTGCCGACCTCGCGGTCGCCACCAATTGCGGCCAGATCAAGACCGGC 142258 Query 2857 TCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 || | ||||| | ||||| | || ||||||||||| | || || ||||| Sbjct 142259 TCCCTTGCACGTTCCGACCGCACCGCCAAATACAACCAGCTCCTGCGCATCGA 142311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155933259570648