Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq54491 149 1e-30 seq27440 113 7e-20 >seq54491 Length=272697 Score = 149 bits (164), Expect = 1e-30 Identities = 211/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGA 196125 |||| | ||||||||||| || | ||| | ||||| |||| || || | || Sbjct 166620 CATGAACCAGTATCACGACCTGCTCGAGCGAATTCTCAGCGACGGCGCGGAAAAGACCGA 166561 Query 196126 CCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA 196185 ||| |||||||| || || |||| |||| |||||||||||| ||||| | Sbjct 166560 CCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCAATCTGGCATC 166501 Query 196186 CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCT 196245 || || ||| || |||| || ||||| || | ||| |||||| | ||||||||||| Sbjct 166500 GGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAATCCATCGTACATGAACTGCT 166441 Query 196246 GTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTG 196305 ||||| ||| || |||||||||||||| |||||||| ||| |||| ||||| ||||| Sbjct 166440 TTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCGTCTCGATCTG 166381 Query 196306 GAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 | | || |||||| ||| || | || || || || ||||| ||||||||| Sbjct 166380 GGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCGCAGTGGCG 166324 >seq27440 Length=426762 Score = 113 bits (124), Expect = 7e-20 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 196108 CGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTACGTCC-TATCTCGGCGCACAGA 196166 |||| ||| || | || || |||||||| ||||| || ||| ||||| || | Sbjct 328867 CGGCGTCGAGAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTAT-TCGGCCATCAAA 328925 Query 196167 TGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTT 196226 |||||||| ||||| ||| |||||| || | || || ||| || | || Sbjct 328926 TGCGCTTCAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGG 328985 Query 196227 CCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATG 196286 | ||| | ||||| ||||| |||||||| || || |||||||||||||| |||||| | Sbjct 328986 CGATCGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCG 329045 Query 196287 ACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTT 196346 ||||||| ||| | |||||| ||||||||||| | | || | || || ||||| | Sbjct 329046 ACAACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCT 329105 Query 196347 ACGGTAAGCAGTGGCG 196362 | || | |||||||| Sbjct 329106 ATGGCCATCAGTGGCG 329121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770995164264240