Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq144170 143 4e-32 seq211269 140 5e-31 seq124495 136 6e-30 seq146992 107 3e-21 seq146993 102 1e-19 seq212700 78.8 1e-12 >seq144170 Length=127 Score = 143 bits (158), Expect = 4e-32 Identities = 98/108 (91%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 ||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||| Sbjct 124 TGATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGATCAATAATTACAATGATCTATC 66 Query 94 CCCATCACGATGAAATTT-CAAAGATTACCCGGACCTGTCGGCCAAGG 140 | || |||||| |||||| |||||||||||||||||| |||||| ||| Sbjct 65 CACAGCACGATTAAATTTGCAAAGATTACCCGGACCTATCGGCCCAGG 18 >seq211269 Length=2841 Score = 140 bits (154), Expect = 5e-31 Identities = 85/89 (96%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 854 Query 206 ACCTGTTATTGCCTCAAACTTCCG-TGGC 233 |||||||||||||||||||||||| |||| Sbjct 855 ACCTGTTATTGCCTCAAACTTCCGCTGGC 883 >seq124495 Length=274 Score = 136 bits (150), Expect = 6e-30 Identities = 88/94 (94%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 183 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 240 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCC 94 ||||||||||| ||| |||| ||||||||||||| Sbjct 241 CTCGTTGAAGATCAATAATTACAATGATCTATCC 274 >seq146992 Length=96 Score = 107 bits (118), Expect = 3e-21 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 1 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 60 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| |||||| ||| Sbjct 61 ACCCGGACCTATCGGCCCAGG 81 >seq146993 Length=127 Score = 102 bits (112), Expect = 1e-19 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 1 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 60 Query 120 ACCCGGACCTGTCGGCCAAGG 140 ||| |||||| |||||| ||| Sbjct 61 ACCAGGACCTATCGGCCCAGG 81 >seq212700 Length=32774 Score = 78.8 bits (86), Expect = 1e-12 Identities = 48/50 (96%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG-TGGC 233 ||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1034 GAACATCTAAGGGCATCCCAGACCTGTTATTGCCTCAAACTTCCGCTGGC 1083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750367161955