Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq211269 232 1e-58 >seq211269 Length=2841 Score = 232 bits (256), Expect = 1e-58 Identities = 223/284 (79%), Gaps = 24/284 (8%) Strand=Plus/Minus Query 58 CCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-------T 110 || ||| |||| | ||||| |||||||||||||||||||||||||||| | Sbjct 1749 CCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCCAAT 1690 Query 111 TTGCT-----CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT- 163 || || ||||||||||||||||| ||||| ||||||||| || | ||||||| Sbjct 1689 TTTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTC 1630 Query 164 -GTTGGTTT--------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||| | ||||| ||||||||||||||||||||| ||||| | | Sbjct 1629 AGTTGGTTTTGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTA 1570 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 |||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||| Sbjct 1569 ATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCA 1510 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | |||||||||||||||||||||| |||||||||||||||| Sbjct 1509 TCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913148698176