Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq210428 172 2e-40 seq223078 116 2e-23 seq150549 95.1 5e-17 seq199384 86.0 3e-14 >seq210428 Length=2035 Score = 172 bits (190), Expect = 2e-40 Identities = 239/337 (71%), Gaps = 37/337 (11%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 507 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 448 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG-------------TGAA 488 | |||||||| ||||| |||||| | ||||| | |||||| | | Sbjct 447 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAAG 388 Query 489 CGG-------AGGTGGGAACC------CGTGAGGGTG--------CACCATCGACCGATC 527 ||| ||||||||| |||| | | | ||||| || |||| | Sbjct 387 CGGTCGCCTGAGGTGGGAAGGGGYATGCGTGCGCGCGTGCTCCCGCACCACCGGCCGACC 328 Query 528 CTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 ||| | ||| || || |||||| ||||| || |||||||||||||||||| |||| Sbjct 327 TGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGA 270 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 |||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 269 ACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGA 210 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 209 CGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 173 Score = 111 bits (122), Expect = 7e-22 Identities = 102/127 (80%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| | | || ||||||||||| || |||||||||||||| ||||||| || Sbjct 927 GGTAAATCCCACCCAAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGT 868 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 || ||||||||||||| |||||| |||||||| | ||||| | |||||||||| || Sbjct 867 GAGGGAAAGATGAAAAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAG 809 Query 193 GGAAGCG 199 ||||||| Sbjct 808 GGAAGCG 802 >seq223078 Length=5571 Score = 116 bits (128), Expect = 2e-23 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || |||||| |||||||| |||||||||| ||||||| |||||||||| ||| Sbjct 3418 GAAGGGTTTGAGCCAGAGCATATTTGTTGGGACCTGAAAGATTGTGAACTATGGGTGACC 3477 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||||||||||||||||||||||||| | || | | ||| ||||||||| | Sbjct 3478 AGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCAAAGTGATACTGATGTGCAAATCATT 3537 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | || | ||| |||||||| || Sbjct 3538 CATCTGAGTTGCCTATAGGGGTGA 3561 >seq150549 Length=127 Score = 95.1 bits (104), Expect = 5e-17 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 29 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGCGGTAAATCCCACCCAAGGCTAAAT 88 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 |||| || |||||||||||||| ||||||| |||| Sbjct 89 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 126 >seq199384 Length=5003 Score = 86.0 bits (94), Expect = 3e-14 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTG--- 103 |||||||||||||||||| |||| ||| ||||||| | | || ||||||||||| Sbjct 2400 GTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAATATTGTCA 2341 Query 104 GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 || |||||||||||||| ||||||| |||| Sbjct 2340 GCGAGAGACCGATAGCGAACAAGTACCGTGA 2310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075192261350