Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq140245 93.3 1e-16 seq90305 93.3 1e-16 seq136096 91.5 4e-16 seq167363 87.8 5e-15 seq112284 82.4 2e-13 seq36597 77.0 8e-12 >seq140245 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| ||||||||||| || | || Sbjct 13 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACTGAGAGGGC 72 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 ||| |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 73 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 124 >seq90305 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || || Sbjct 120 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGATGGC 61 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 ||| |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 60 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 9 >seq136096 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| ||| |||||||| || | || Sbjct 21 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCTGTAATACGGAGAGGGC 80 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG 105 ||| |||| ||| | | |||||| |||||| ||||| ||| || Sbjct 81 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGG 123 >seq167363 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||| | |||| | | |||||| ||||||||||| |||||||||||| || | ||||| || Sbjct 1 AAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGT 60 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || || | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 61 TATACGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 106 >seq112284 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | ||||| |||| ||| | | ||| Sbjct 5 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTT 64 Query 84 GGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||||| ||||| ||| || |||| |||| Sbjct 65 GGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 95 >seq36597 Length=93 Score = 77.0 bits (84), Expect = 8e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 266 ACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 325 |||||| || | |||| ||||| | |||| |||||||||||||| |||||||||||| | Sbjct 1 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 60 Query 326 GCCCTAAACGAT 337 ||||| | |||| Sbjct 61 GCCCTGACCGAT 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1286709529248