Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq156804 95.1 2e-17 seq123957 95.1 2e-17 seq8609 91.5 2e-16 seq104088 82.4 1e-13 seq101885 82.4 1e-13 >seq156804 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| || | ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCT 71 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 72 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 105 >seq123957 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| || | ||| ||| | ||| Sbjct 23 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTTCAA-CTTAGCAGAGTCCT 81 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 82 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 115 >seq8609 Length=125 Score = 91.5 bits (100), Expect = 2e-16 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | | | Sbjct 7 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTC-T 64 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 65 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 98 >seq104088 Length=83 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 19 GGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTA 78 |||||| ||||| || ||| ||||| |||| ||| ||| | ||||||||||||||| Sbjct 83 GGCAGGTGTCAGACCCTATTCATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTA 25 Query 79 AACAGTCGCTTCCCTCTATTCT 100 |||||||||| ||||||||||| Sbjct 24 AACAGTCGCTACCCTCTATTCT 3 >seq101885 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||||||||||||||| Sbjct 67 GCTTCCCTCTATTCT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692892230401