Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq83059 127 4e-27 seq119719 125 2e-26 seq30243 123 5e-26 seq18483 113 1e-22 seq14236 113 1e-22 seq165067 111 3e-22 seq123957 102 2e-19 seq62752 100 6e-19 seq37338 100 6e-19 seq117228 98.7 2e-18 seq156804 96.9 7e-18 seq113629 95.1 3e-17 seq94887 95.1 3e-17 seq16113 93.3 9e-17 seq8609 93.3 9e-17 seq22681 91.5 3e-16 seq14958 91.5 3e-16 seq106789 89.7 1e-15 seq89286 89.7 1e-15 seq156710 87.8 4e-15 seq67862 87.8 4e-15 seq131344 84.2 5e-14 seq104088 80.6 6e-13 seq101885 80.6 6e-13 seq30242 80.6 6e-13 seq34323 77.0 7e-12 >seq83059 Length=127 Score = 127 bits (140), Expect = 4e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||||||| || ||||||| || ||| ||| |||||||||| ||||||||| ||||| Sbjct 10 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAATGAATT 69 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 ||||||||||||||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 70 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATATTCA 124 >seq119719 Length=127 Score = 125 bits (138), Expect = 2e-26 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||||||| || ||||||| || ||| ||| |||||||||| ||| ||||||||||| Sbjct 16 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCAGACAAGGAATT 75 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTG 148 ||||||||||||||||||||| ||||| |||||||||||||| Sbjct 76 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 117 >seq30243 Length=127 Score = 123 bits (136), Expect = 5e-26 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| |||||||||| |||||||||||||||||||| |||||| Sbjct 11 AAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTTCCTTAG 70 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 ||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 71 GACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATATTCA 113 >seq18483 Length=127 Score = 113 bits (124), Expect = 1e-22 Identities = 107/134 (80%), Gaps = 7/134 (5%) Strand=Plus/Minus Query 74 TCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 133 || ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 127 TCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTAC 68 Query 134 GGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAAC 193 || ||||||||||| | ||| |||| || ||| |||| || |||| || Sbjct 67 AGCAGCCGTTTACTGAGATTTATATTCATGGC----ATT--TCTACCA-ATCCTTTTTGT 15 Query 194 CTTCCAGCACCGGG 207 ||| |||||||||| Sbjct 14 CTTTCAGCACCGGG 1 >seq14236 Length=127 Score = 113 bits (124), Expect = 1e-22 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 70 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAG 129 || ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 2 CCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 61 Query 130 TTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 || | |||||||||||||| | ||| |||| Sbjct 62 TTTCAGCCGCCGTTTACTGAGATTTATATTCA 93 >seq165067 Length=88 Score = 111 bits (122), Expect = 3e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 70 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAG 129 || ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 86 CCATTCATGCAGGTCGGAACTCTCCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 27 Query 130 TTACGGCCGCCGTTTACTG 148 |||| |||||||||||||| Sbjct 26 TTACAGCCGCCGTTTACTG 8 >seq123957 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | |||||||||| |||| Sbjct 23 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTTCAACTTAGCAGAGTCCTG 82 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 83 TGTTTTTAGTAAACAGTCGCT 103 >seq62752 Length=71 Score = 100 bits (110), Expect = 6e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 2 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 61 Query 122 CGTTATAGTT 131 |||||| ||| Sbjct 62 CGTTATGGTT 71 >seq37338 Length=127 Score = 100 bits (110), Expect = 6e-19 Identities = 104/134 (78%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC 168 ||||||||||||||||||| ||||| |||||||||||||| | ||| |||| || Sbjct 1 GCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATATTCATGGC--- 57 Query 169 GATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACAT 228 ||| ||| || |||| || ||| |||||||||||||| ||||| ||||||||| Sbjct 58 -ATT--TCTGCCA-ATCCTTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATACAT 113 Query 229 CGTCTTGCGACTTA 242 ||| || | ||||| Sbjct 114 CGTTTTACAACTTA 127 >seq117228 Length=76 Score = 98.7 bits (108), Expect = 2e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 93 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 152 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 1 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGAT 60 Query 153 TTAAGTTCA 161 |||| |||| Sbjct 61 TTAAATTCA 69 >seq156804 Length=127 Score = 96.9 bits (106), Expect = 7e-18 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | ||||||| || |||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 72 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 73 TGTTTTTAGTAAACAGTCGCT 93 >seq113629 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAAATCGT 65 |||||||||| | | | |||||||| || ||| | || ||||||| || |||| Sbjct 15 GCATCTTCACAGCAAGTTTAATTTCACT-AGGCTAATACTGGAGACAGTATGGAAGTCGT 73 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 ||| || ||| ||| |||||||||| |||||||||||||||||||||||||||| Sbjct 74 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGG 127 >seq94887 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 103/134 (77%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 135 GCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACC 194 |||||||||||||| | ||| |||| || ||| |||| || |||| || | Sbjct 1 GCCGCCGTTTACTGAGATTTATATTCATGGC----ATT--TCTACCA-ATCCTTTTTGTC 53 Query 195 TTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGT 254 || ||||||| |||||| ||||| |||||||||||| || | |||||||||| ||||| Sbjct 54 TTTCAGCACCTGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGT 113 Query 255 GTTTTTGGTAAACA 268 |||||| ||||||| Sbjct 114 GTTTTTAGTAAACA 127 >seq16113 Length=66 Score = 93.3 bits (102), Expect = 9e-17 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 93 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTG 148 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 56 >seq8609 Length=125 Score = 93.3 bits (102), Expect = 9e-17 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | ||||||||| | ||| Sbjct 7 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAG-AGTCTG 65 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 66 TGTTTTTAGTAAACAGTCGCT 86 >seq22681 Length=67 Score = 91.5 bits (100), Expect = 3e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 3 AAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAG 62 Query 119 GACCG 123 ||||| Sbjct 63 GACCG 67 >seq14958 Length=81 Score = 91.5 bits (100), Expect = 3e-16 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | |||||||||| |||| Sbjct 7 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTG 66 Query 254 TGTTTTTGGTAAACA 268 ||||||| ||||||| Sbjct 67 TGTTTTTAGTAAACA 81 >seq106789 Length=64 Score = 89.7 bits (98), Expect = 1e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 62 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 3 Query 122 CG 123 || Sbjct 2 CG 1 >seq89286 Length=64 Score = 89.7 bits (98), Expect = 1e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 2 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 61 Query 122 CG 123 || Sbjct 62 CG 63 >seq156710 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAAATCGT 65 |||||||||| | | | |||||||| || ||| | || |||||| || |||| Sbjct 17 GCATCTTCACAGCAAGTTTAATTTCACT-AGGCTAATACTGGAGACAGAAGGGAAGTCGT 75 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 117 ||| || ||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 76 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTA 127 >seq67862 Length=75 Score = 87.8 bits (96), Expect = 4e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 96 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTG 148 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1 GACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 53 >seq131344 Length=69 Score = 84.2 bits (92), Expect = 5e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 206 GGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAA 265 |||||| ||||| |||||||||||| || | |||||||||| ||||||||||| |||| Sbjct 69 GGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTGTTTTTAGTAA 10 Query 266 ACAGTCGCT 274 ||||||||| Sbjct 9 ACAGTCGCT 1 >seq104088 Length=83 Score = 80.6 bits (88), Expect = 6e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 206 GGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAA 265 |||||| ||||| ||||| |||||| || | |||||||||| ||||||||||| |||| Sbjct 83 GGCAGGTGTCAGACCCTATTCATCGTTTTACAACTTAGCAGAGTCCTGTGTTTTTAGTAA 24 Query 266 ACAGTCGCT 274 ||||||||| Sbjct 23 ACAGTCGCT 15 >seq101885 Length=127 Score = 80.6 bits (88), Expect = 6e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 213 GTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||| |||||||||||| || | |||||||||| ||||||||||| ||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCG 67 Query 273 CTTGGGCCTATTCT 286 ||| ||||||| Sbjct 66 CTTCCCTCTATTCT 53 >seq30242 Length=69 Score = 80.6 bits (88), Expect = 6e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 117 || ||||||| || ||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 11 AAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTA 69 >seq34323 Length=70 Score = 77.0 bits (84), Expect = 7e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 |||||||||||||||||||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 1 GAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATATTCA 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060018768512