Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq131480 87.8 5e-15 seq122022 87.8 5e-15 seq159848 86.0 2e-14 >seq131480 Length=95 Score = 87.8 bits (96), Expect = 5e-15 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||||||||| Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGCAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAA 88 ||||||||||| || ||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAA 94 >seq122022 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4 GACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTG 63 |||||||||||| |||||||||| || |||||| | | ||||||||||| ||||| Sbjct 127 GACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTATGTG 68 Query 64 GTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||| |||| || ||||| ||||| |||||||| ||||| Sbjct 67 GTTAAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 27 >seq159848 Length=125 Score = 86.0 bits (94), Expect = 2e-14 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||| |||| || Sbjct 12 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCG--GGAGTAT 69 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 70 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500628979520