Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq212421 363 3e-98 seq194455 158 2e-36 seq221315 152 9e-35 >seq212421 Length=3345 Score = 363 bits (402), Expect = 3e-98 Identities = 244/275 (89%), Gaps = 13/275 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 900 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 959 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 960 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1019 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1020 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1079 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAA 258 |||||||||||||||| |||||||||| |||||| ||| | |||| Sbjct 1080 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAA 1139 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||||||||| Sbjct 1140 AGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1174 >seq194455 Length=964 Score = 158 bits (174), Expect = 2e-36 Identities = 107/121 (88%), Gaps = 8/121 (7%) Strand=Plus/Minus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 195 GGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATC- 137 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 136 -------AAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 84 Query 216 G 216 | Sbjct 83 G 83 >seq221315 Length=7443 Score = 152 bits (168), Expect = 9e-35 Identities = 102/113 (90%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 3788 CATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGCTCATGTTCCCTAT 3729 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 ||||||||||||||||||| |||| ||||||||||| | ||||| | ||| Sbjct 3728 TAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTT--GCATGATGGAAAG 3678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852484973472