Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq90305 100 5e-19 seq167363 93.3 7e-17 seq140245 91.5 2e-16 seq136096 91.5 2e-16 seq112284 86.0 1e-14 seq16154 80.6 4e-13 seq436 75.2 2e-11 >seq90305 Length=127 Score = 100 bits (110), Expect = 5e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| ||||||| || ||||||||| Sbjct 18 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCATCTCCGTATTACC 77 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 78 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 120 >seq167363 Length=127 Score = 93.3 bits (102), Expect = 7e-17 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 97 CCACCTACGCACCCTTTACACCCAGTCAATGCGTATAACACTTGCCCTCTCCGTATTACC 38 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||| ||||||||||| |||||| | ||||| Sbjct 37 GCGACTGCTGGCACGAAGTTAGTCAGGGCTT 7 >seq140245 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||| Sbjct 115 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCAGTATTACC 56 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 55 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 13 >seq136096 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||| Sbjct 123 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACA 64 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 63 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 21 >seq112284 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||| | | ||| || ||||| |||||| || ||||||||| Sbjct 86 CCACCTACGCACCCTTTACACCAAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 27 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 26 GCGACTGCTGGCACGAAGTTAG 5 >seq16154 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 74 CCACCTACGCCCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq436 Length=72 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 71 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 12 Query 248 GCGGCTGCTGG 258 ||| ||||||| Sbjct 11 GCGACTGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827000404027