Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq133505 96.9 5e-18 seq168043 86.0 1e-14 seq37880 80.6 4e-13 seq133506 78.8 1e-12 seq975 78.8 1e-12 seq168042 77.0 5e-12 seq116546 77.0 5e-12 seq104961 77.0 5e-12 >seq133505 Length=86 Score = 96.9 bits (106), Expect = 5e-18 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 1 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 60 Query 228 CAACCCTTGGGACCTACTTCAGCCCC 253 ||||||||| ||| || |||| || Sbjct 61 TAACCCTTGGAACCGCCTGCAGCTCC 86 >seq168043 Length=85 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| Sbjct 1 AACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGC 60 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 || ||||| || ||| |||||||| Sbjct 61 TCCGGGATGTGATGAGTCGACATCG 85 >seq37880 Length=78 Score = 80.6 bits (88), Expect = 4e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 175 GTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCT 234 ||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| |||||| Sbjct 78 GTCTCACGACGTTCT-AACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCT 20 Query 235 TGGGACCTACTTCAGCCCC 253 ||| ||| || |||| || Sbjct 19 TGGAACCGCCTGCAGCTCC 1 >seq133506 Length=64 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 1 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 60 Query 228 CAA 230 || Sbjct 61 TAA 63 >seq975 Length=64 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 63 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 4 Query 228 CAA 230 || Sbjct 3 TAA 1 >seq168042 Length=72 Score = 77.0 bits (84), Expect = 5e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| Sbjct 1 AACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGC 60 Query 251 CCCAGGATGAGA 262 |||||||| || Sbjct 61 TCCAGGATGTGA 72 >seq116546 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| || || Sbjct 3 CCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGA 62 Query 266 GCCGACATCG 275 | |||||||| Sbjct 63 GACGACATCG 72 >seq104961 Length=126 Score = 77.0 bits (84), Expect = 5e-12 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| | Sbjct 124 CGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTG 65 Query 262 ACGAGCCGACATCG 275 | ||| |||||||| Sbjct 64 A-GAGTCGACATCG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779104627732