Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq140245 114 4e-23 seq90305 114 4e-23 seq167363 111 5e-22 seq136096 111 5e-22 seq112284 96.9 1e-17 seq16154 87.8 5e-15 seq62913 82.4 2e-13 seq436 77.0 1e-11 >seq140245 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| ||||||||||| || ||| Sbjct 12 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACTGAGAGGG 71 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 72 CAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 125 >seq90305 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || || Sbjct 121 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGATGG 62 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 61 CAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 8 >seq167363 Length=127 Score = 111 bits (122), Expect = 5e-22 Identities = 91/108 (84%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 ||||| |||||| | |||||| ||||||||||| |||||||||||| || |||| || || Sbjct 2 AGGAG-AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGT 60 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 61 TATACGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 107 >seq136096 Length=127 Score = 111 bits (122), Expect = 5e-22 Identities = 102/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 368 CAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGC 425 |||||| |||||| | |||||||| | ||||||| | |||||| ||||||||||| Sbjct 1 CAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGT 60 Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 ||| |||||||| || |||| || ||||| || | | ||| ||| ||||||||||||||| Sbjct 61 CGCTGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAG 119 Query 486 GTGGTTT 492 |||| || Sbjct 120 GTGGCTT 126 >seq112284 Length=127 Score = 96.9 bits (106), Expect = 1e-17 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||| Sbjct 5 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT- 63 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || ||||||||||||||||||| || |||||| Sbjct 64 TGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 96 >seq16154 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAA 59 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| |||||||||| || |||||| Sbjct 60 AGGGGGCGTAGGTGGCTTGTTAAGT 84 >seq62913 Length=124 Score = 82.4 bits (90), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 197 CAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 |||| ||||||| |||| | |||||| ||||| |||||||||| ||||| | ||| Sbjct 123 CAAGCCGACGATGCTTAGCTGGTTTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACG 65 Query 257 GTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGAT 315 | | | || ||| | ||||||||||| ||||||| ||||||||| ||||| |||| Sbjct 64 GCCAAGTCTTCTAAAAG-GGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGAT 7 >seq436 Length=72 Score = 77.0 bits (84), Expect = 1e-11 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 418 CCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGG 477 ||||||| |||||||||||| || |||| || ||||| || | | ||| ||| ||||||| Sbjct 1 CCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGG 59 Query 478 GTGCGTAGGTGG 489 |||||||||||| Sbjct 60 GTGCGTAGGTGG 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1494243324288