Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq167363 118 3e-24 seq140245 118 3e-24 seq90305 118 3e-24 seq136096 111 4e-22 seq112284 104 6e-20 seq16154 93.3 1e-16 seq174400 89.7 1e-15 seq36597 89.7 1e-15 seq436 84.2 5e-14 seq110568 78.8 2e-12 seq125789 73.4 9e-11 >seq167363 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 7 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 66 ||||| |||||| | |||||| ||||||||||| |||||||||||| || |||| || || Sbjct 2 AGGAG-AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGT 60 Query 67 TATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 61 TATACGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 107 >seq140245 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| ||||||||||| || |||| Sbjct 13 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACTGAGAGGGC 72 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 73 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 125 >seq90305 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 120 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGATGGC 61 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 60 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 8 >seq136096 Length=127 Score = 111 bits (122), Expect = 4e-22 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| ||| |||||||| || |||| Sbjct 21 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCTGTAATACGGAGAGGGC 80 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 || ||||| || | | |||||| ||||||||||||||||||| || Sbjct 81 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTT 126 >seq112284 Length=127 Score = 104 bits (114), Expect = 6e-20 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||| Sbjct 5 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTT 64 Query 82 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||||||||||||||||| || |||||| Sbjct 65 GGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 96 >seq16154 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89 |||||||||| |||||||||||| || |||| || ||||| || | | |||||| ||||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAA 60 Query 90 GGGTGCGTAGGTGGTTTCTTAAGT 113 ||| |||||||||| || |||||| Sbjct 61 GGGGGCGTAGGTGGCTTGTTAAGT 84 >seq174400 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| | ||||| | |||| |||||||||||||| |||||||||||| | Sbjct 127 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 68 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 67 GCCATGACCGATGAATA 51 >seq36597 Length=93 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| | ||||| | |||| |||||||||||||| |||||||||||| | Sbjct 1 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 60 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 61 GCCCTGACCGATGAATA 77 >seq436 Length=72 Score = 84.2 bits (92), Expect = 5e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 33 CCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGG 92 ||||||| |||||||||||| || |||| || ||||| || | | |||||| |||||||| Sbjct 1 CCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAAGGG 60 Query 93 TGCGTAGGTGG 103 ||||||||||| Sbjct 61 TGCGTAGGTGG 71 >seq110568 Length=77 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| | ||||| | |||| |||||||||||||| |||||||||||| | Sbjct 15 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 74 Query 324 GCC 326 ||| Sbjct 75 GCC 77 >seq125789 Length=66 Score = 73.4 bits (80), Expect = 9e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 42 GCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGT 101 ||||||||||| || |||| || ||||| || | | |||||| ||||||||||||||||| Sbjct 1 GCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGT 60 Query 102 GGTTT 106 || || Sbjct 61 GGCTT 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200503183616